Difference between revisions of "TSS:Hg 101440.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=47 |entrez_id=1842 |gc_percent=0.353234 |gene_alias=- |gene_description=extracellular matrix protein 2 |gene_name=ECM2 |gene_type=p...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000344604.9:0 ENST00000375540.5:0 uc011lty.3:0 uc004asi.4:0 BX537976:0 ENST00000444490.6:-34 NM_001197296:-34 NM_001197295:-34 NM_001393:-34 uc004asf.5:-34 AK296458:38 AK312820:43 AK303922:45 AB011792:63 | ||
| + | |chr=chr9 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| + | |distance=0 | ||
|distance_to_tss=47 | |distance_to_tss=47 | ||
| + | |end=92536058 | ||
|entrez_id=1842 | |entrez_id=1842 | ||
|gc_percent=0.353234 | |gc_percent=0.353234 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=extracellular matrix protein 2 | |gene_description=extracellular matrix protein 2 | ||
| − | |gene_name=ECM2 | + | |gene_id=1842 |
| + | |gene_name=extracellular matrix protein 2 | ||
| + | |gene_source=HGNC:3154 | ||
| + | |gene_symbol=ECM2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3154 | ||
|nearest_ensembl=ENSG00000106823 | |nearest_ensembl=ENSG00000106823 | ||
|nearest_promoter_id=NM_001197295 | |nearest_promoter_id=NM_001197295 | ||
|nearest_refseq=NM_001393 | |nearest_refseq=NM_001393 | ||
|nearest_unigene=Hs.117060 | |nearest_unigene=Hs.117060 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=92536032 | ||
| + | |strand=- | ||
|tata_box="26(GTTTTTAAAGAA,+,0.00)" | |tata_box="26(GTTTTTAAAGAA,+,0.00)" | ||
| + | |transcript_name=ENST00000344604.9 ENST00000375540.5 uc011lty.3 uc004asi.4 BX537976 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101440.1 | |tss_id=hg_101440.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O94769 Q5T9F3 | ||
}} | }} | ||
Revision as of 18:43, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000344604.9 ENST00000375540.5 uc011lty.3 uc004asi.4 BX537976 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000344604.9:0 ENST00000375540.5:0 uc011lty.3:0 uc004asi.4:0 BX537976:0 ENST00000444490.6:-34 NM_001197296:-34 NM_001197295:-34 NM_001393:-34 uc004asf.5:-34 AK296458:38 AK312820:43 AK303922:45 AB011792:63 |
TATA-Box annotation
| Distance to TSS: | 47 |
|---|---|
| Nearest PromoterID: | NM_001197295 |
| Entrez ID: | 1842 |
| Nearest Unigene: | Hs.117060 |
| Nearest Refseq: | NM_001393 |
| Nearest Ensembl: | ENSG00000106823 |
| Gene Name: | extracellular matrix protein 2 |
| Gene Alias: | - |
| Gene Description: | extracellular matrix protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.353234 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "26(GTTTTTAAAGAA,+,0.00)" |
