Difference between revisions of "TSS:Hg 117686.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=404 |entrez_id=100128239 |gc_percent=0.656716 |gene_alias=- |gene_description=uncharacterized LOC100128239 |gene_name=LOC100128...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000529070.1:-16 uc058jgl.1:-16 AK308670:-16 ENST00000533091.1:111 uc058jgm.1:111 ENST00000527712.1:120 uc058jgn.1:120 ENST00000532706.1:-281 uc058jgk.1:-281 ENST00000533922.5:-396 NR_027276:-396 uc001qha.2:-396 AK125302:-396 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| + | |distance=-16 | ||
|distance_to_tss=404 | |distance_to_tss=404 | ||
| + | |end=134032685 | ||
|entrez_id=100128239 | |entrez_id=100128239 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=uncharacterized LOC100128239 | |gene_description=uncharacterized LOC100128239 | ||
| − | |gene_name=LOC100128239 | + | |gene_id=100128239 |
| + | |gene_name=uncharacterized LOC100128239 | ||
| + | |gene_source=EntrezGene:100128239 | ||
| + | |gene_symbol=LOC100128239 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id= | ||
|nearest_ensembl=ENSG00000204241 | |nearest_ensembl=ENSG00000204241 | ||
|nearest_promoter_id=NR_027276 | |nearest_promoter_id=NR_027276 | ||
|nearest_refseq=NR_027276 | |nearest_refseq=NR_027276 | ||
|nearest_unigene=Hs.423734 | |nearest_unigene=Hs.423734 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=134032667 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000529070.1 uc058jgl.1 AK308670 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_117686.1 | |tss_id=hg_117686.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 06:18, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000529070.1 uc058jgl.1 AK308670 |
|---|---|
| Distance: | -16 |
| Num_trans: | 13 |
| All_trans: | ENST00000529070.1:-16 uc058jgl.1:-16 AK308670:-16 ENST00000533091.1:111 uc058jgm.1:111 ENST00000527712.1:120 uc058jgn.1:120 ENST00000532706.1:-281 uc058jgk.1:-281 ENST00000533922.5:-396 NR_027276:-396 uc001qha.2:-396 AK125302:-396 |
TATA-Box annotation
| Distance to TSS: | 404 |
|---|---|
| Nearest PromoterID: | NR_027276 |
| Entrez ID: | 100128239 |
| Nearest Unigene: | Hs.423734 |
| Nearest Refseq: | NR_027276 |
| Nearest Ensembl: | ENSG00000204241 |
| Gene Name: | uncharacterized LOC100128239 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100128239 |
| Gene Type: | ncRNA |
| CpG%: | 0.035 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
