Difference between revisions of "TSS:Hg 101577.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=41 |entrez_id=5727 |gc_percent=0.61194 |gene_alias=BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11 |gene_description=patched 1 |gene_name=P...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HPE7= | ||
| + | |NBCCS= | ||
| + | |PTC= | ||
| + | |PTC1= | ||
| + | |PTCH= | ||
| + | |PTCH11= | ||
| + | |all_trans=ENST00000437951.5:-34 ENST00000375274.6:-34 NM_001083603:-34 NM_001083602:-34 uc010mrr.4:-34 uc004avm.5:-34 AB189436:-34 AB189437:-34 ENST00000430669.6:-126 ENST00000468211.6:-126 uc064umn.1:-126 uc004avo.3:-126 BC043542:-126 ENST00000551623.1:259 ENST00000551425.1:259 uc064unc.1:259 uc010mrw.2:259 AB239329:259 AB212827:259 AB212828:259 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=-34 | ||
|distance_to_tss=41 | |distance_to_tss=41 | ||
| + | |end=95516931 | ||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
|gene_alias=BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11 | |gene_alias=BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11 | ||
|gene_description=patched 1 | |gene_description=patched 1 | ||
| − | |gene_name=PTCH1 | + | |gene_id=5727 |
| + | |gene_name=patched 1 | ||
| + | |gene_source=HGNC:9585 | ||
| + | |gene_symbol=PTCH1 | ||
| + | |gene_synonyms=BCNS | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9585 | ||
|nearest_ensembl=ENSG00000185920 | |nearest_ensembl=ENSG00000185920 | ||
|nearest_promoter_id=NM_001083602 | |nearest_promoter_id=NM_001083602 | ||
|nearest_refseq=NM_000264 | |nearest_refseq=NM_000264 | ||
|nearest_unigene=Hs.494538 | |nearest_unigene=Hs.494538 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=95516916 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000437951.5 ENST00000375274.6 NM_001083603 NM_001083602 uc010mrr.4 uc004avm.5 AB189436 AB189437 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101577.1 | |tss_id=hg_101577.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q13635 Q59FG5 | ||
}} | }} | ||
Revision as of 18:49, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000437951.5 ENST00000375274.6 NM_001083603 NM_001083602 uc010mrr.4 uc004avm.5 AB189436 AB189437 |
|---|---|
| Distance: | -34 |
| Num_trans: | 20 |
| All_trans: | ENST00000437951.5:-34 ENST00000375274.6:-34 NM_001083603:-34 NM_001083602:-34 uc010mrr.4:-34 uc004avm.5:-34 AB189436:-34 AB189437:-34 ENST00000430669.6:-126 ENST00000468211.6:-126 uc064umn.1:-126 uc004avo.3:-126 BC043542:-126 ENST00000551623.1:259 ENST00000551425.1:259 uc064unc.1:259 uc010mrw.2:259 AB239329:259 AB212827:259 AB212828:259 |
TATA-Box annotation
| Distance to TSS: | 41 |
|---|---|
| Nearest PromoterID: | NM_001083602 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | patched 1 |
| Gene Alias: | BCNS |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
