Personal tools

Difference between revisions of "TSS:Hg 117819.1"

From referenceTSS

Jump to: navigation, search
(Created page with "{{TSSDetail |cpg_percent=0.16 |distance_to_tss=15 |entrez_id=347862 |gc_percent=0.78607 |gene_alias=- |gene_description=Parkinson disease 7 domain containing 1 |gene_name=PDDC...")
 
Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
 +
|all_trans=ENST00000397472.6:0 ENST00000319863.12:0 ENST00000354286.8:0 ENST00000526325.5:0 ENST00000524550.5:0 ENST00000532320.5:0 ENST00000534603.5:0 ENST00000529966.5:0 ENST00000532839.5:0 ENST00000528602.1:0 NM_001318818:0 NM_001318820:0 NM_001318821:0 NM_001318822:0 NM_001318823:0 NM_001318824:0 NM_182612:0 NR_134867:0 NR_134868:0 uc001lrd.4:0 uc001lrc.4:0 uc001lrg.2:0 uc057xlm.1:0 uc057xln.1:0 uc057xlo.1:0 uc010qwn.2:0 uc057xlq.1:0 uc057xls.1:0 uc057xlt.1:0 BC110868:0 AK091602:0 AK092816:0 AK128653:0 AK293559:0 AK309153:0 BC143419:0 BC112145:0 BC143415:0 BC143416:0 BC143418:0 BC143421:0 BC143423:0 BC143420:0 BC143422:0 KJ904221:4 ENST00000529362.1:289 uc057xlu.1:289
 +
|chr=chr11
 
|cpg_percent=0.16
 
|cpg_percent=0.16
 +
|distance=0
 
|distance_to_tss=15
 
|distance_to_tss=15
 +
|end=777507
 
|entrez_id=347862
 
|entrez_id=347862
 
|gc_percent=0.78607
 
|gc_percent=0.78607
 
|gene_alias=-
 
|gene_alias=-
 
|gene_description=Parkinson disease 7 domain containing 1
 
|gene_description=Parkinson disease 7 domain containing 1
−
|gene_name=PDDC1
+
|gene_id=347862
 +
|gene_name=Parkinson disease 7 domain containing 1
 +
|gene_source=HGNC:26616
 +
|gene_symbol=PDDC1
 +
|gene_synonyms=FLJ34283
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 +
|hgnc_mgi_id=HGNC:26616
 
|nearest_ensembl=ENSG00000177225
 
|nearest_ensembl=ENSG00000177225
 
|nearest_promoter_id=NM_001318821
 
|nearest_promoter_id=NM_001318821
 
|nearest_refseq=NM_182612
 
|nearest_refseq=NM_182612
 
|nearest_unigene=Hs.218362
 
|nearest_unigene=Hs.218362
 +
|num_trans=47
 +
|species=human
 +
|start=777467
 +
|strand=-
 +
|transcript_name=ENST00000397472.6 ENST00000319863.12 ENST00000354286.8 ENST00000526325.5 ENST00000524550.5 ENST00000532320.5 ENST00000534603.5 ENST00000529966.5 ENST00000532839.5 ENST00000528602.1 NM_001318818 NM_001318820 NM_001318821 NM_001318822 NM_001318823 NM_001318824 NM_182612 NR_134867 NR_134868 uc001lrd.4 uc001lrc.4 uc001lrg.2 uc057xlm.1 uc057xln.1 uc057xlo.1 uc010qwn.2 uc057xlq.1 uc057xls.1 uc057xlt.1 BC110868 AK091602 AK092816 AK128653 AK293559 AK309153 BC143419 BC112145 BC143415 BC143416 BC143418 BC143421 BC143423 BC143420 BC143422
 +
|tss_classification=yes
 
|tss_id=hg_117819.1
 
|tss_id=hg_117819.1
 +
|tss_score=1
 +
|uniprot_id=B7Z1J9 B7ZKW3 B7ZKW4 E9PLI5 E9PQD8 Q8NB37
 
}}
 
}}

Revision as of 06:24, 9 March 2018

Basic information about the TSS

TSS ID:hg_117819.1
Species:human
Chr:chr11
TSS Classification:yes
Start:777467
End:777507
Strand:-
TSS Score:1
Start of the center position in the TSS region:
End of the center position in the TSS region:



Gene and protein annotation

Transcript_name:ENST00000397472.6 ENST00000319863.12 ENST00000354286.8 ENST00000526325.5 ENST00000524550.5 ENST00000532320.5 ENST00000534603.5 ENST00000529966.5 ENST00000532839.5 ENST00000528602.1 NM_001318818 NM_001318820 NM_001318821 NM_001318822 NM_001318823 NM_001318824 NM_182612 NR_134867 NR_134868 uc001lrd.4 uc001lrc.4 uc001lrg.2 uc057xlm.1 uc057xln.1 uc057xlo.1 uc010qwn.2 uc057xlq.1 uc057xls.1 uc057xlt.1 BC110868 AK091602 AK092816 AK128653 AK293559 AK309153 BC143419 BC112145 BC143415 BC143416 BC143418 BC143421 BC143423 BC143420 BC143422
Distance:0
GeneID:347862
HGNC/MGI_ID:HGNC:26616
UniProt_ID:B7Z1J9 B7ZKW3 B7ZKW4 E9PLI5 E9PQD8 Q8NB37
Gene_name:Parkinson disease 7 domain containing 1
Gene_symbol:PDDC1
Gene_synonyms:FLJ34283
Gene_source:HGNC:26616



Transcript annotation

Transcript_name:ENST00000397472.6 ENST00000319863.12 ENST00000354286.8 ENST00000526325.5 ENST00000524550.5 ENST00000532320.5 ENST00000534603.5 ENST00000529966.5 ENST00000532839.5 ENST00000528602.1 NM_001318818 NM_001318820 NM_001318821 NM_001318822 NM_001318823 NM_001318824 NM_182612 NR_134867 NR_134868 uc001lrd.4 uc001lrc.4 uc001lrg.2 uc057xlm.1 uc057xln.1 uc057xlo.1 uc010qwn.2 uc057xlq.1 uc057xls.1 uc057xlt.1 BC110868 AK091602 AK092816 AK128653 AK293559 AK309153 BC143419 BC112145 BC143415 BC143416 BC143418 BC143421 BC143423 BC143420 BC143422
Distance:0
Num_trans:47
All_trans:ENST00000397472.6:0 ENST00000319863.12:0 ENST00000354286.8:0 ENST00000526325.5:0 ENST00000524550.5:0 ENST00000532320.5:0 ENST00000534603.5:0 ENST00000529966.5:0 ENST00000532839.5:0 ENST00000528602.1:0 NM_001318818:0 NM_001318820:0 NM_001318821:0 NM_001318822:0 NM_001318823:0 NM_001318824:0 NM_182612:0 NR_134867:0 NR_134868:0 uc001lrd.4:0 uc001lrc.4:0 uc001lrg.2:0 uc057xlm.1:0 uc057xln.1:0 uc057xlo.1:0 uc010qwn.2:0 uc057xlq.1:0 uc057xls.1:0 uc057xlt.1:0 BC110868:0 AK091602:0 AK092816:0 AK128653:0 AK293559:0 AK309153:0 BC143419:0 BC112145:0 BC143415:0 BC143416:0 BC143418:0 BC143421:0 BC143423:0 BC143420:0 BC143422:0 KJ904221:4 ENST00000529362.1:289 uc057xlu.1:289



TATA-Box annotation

Distance to TSS:15
Nearest PromoterID:NM_001318821
Entrez ID:347862
Nearest Unigene:Hs.218362
Nearest Refseq:NM_182612
Nearest Ensembl:ENSG00000177225
Gene Name:Parkinson disease 7 domain containing 1
Gene Alias:-
Gene Description:Parkinson disease 7 domain containing 1
Gene Type:protein-coding
CpG%:0.16
GC%:0.78607
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
Retrieved from "http://reftss.riken.jp/reftss-v3/index.php?title=TSS:Hg_117819.1&oldid=44613"