Difference between revisions of "TSS:Hg 101586.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=-11 |entrez_id=100128782 |gc_percent=0.701493 |gene_alias=C9orf130|NAG11|NAG12 |gene_description=long intergenic non-protein co...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |NAG11= | ||
| + | |NAG12= | ||
| + | |all_trans=ENST00000412446.5:0 ENST00000321517.3:0 NR_023390:0 NR_023389:0 uc004avp.5:0 uc004avs.3:0 AL389954:0 AF194971:0 ENST00000429781.1:365 uc004avr.3:365 AK092137:365 ENST00000433656.2:472 uc064unj.1:472 AF170307:472 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=0 | ||
|distance_to_tss=-11 | |distance_to_tss=-11 | ||
| + | |end=95876024 | ||
|entrez_id=100128782 | |entrez_id=100128782 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
|gene_alias=C9orf130|NAG11|NAG12 | |gene_alias=C9orf130|NAG11|NAG12 | ||
|gene_description=long intergenic non-protein coding RNA 476 | |gene_description=long intergenic non-protein coding RNA 476 | ||
| − | |gene_name=LINC00476 | + | |gene_id=100128782 |
| + | |gene_name=long intergenic non-protein coding RNA 476 | ||
| + | |gene_source=HGNC:27858 | ||
| + | |gene_symbol=LINC00476 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:27858 | ||
|nearest_ensembl=ENSG00000175611 | |nearest_ensembl=ENSG00000175611 | ||
|nearest_promoter_id=NR_023390 | |nearest_promoter_id=NR_023390 | ||
|nearest_refseq=NR_023389 | |nearest_refseq=NR_023389 | ||
|nearest_unigene=Hs.494549 | |nearest_unigene=Hs.494549 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=95875951 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000412446.5 ENST00000321517.3 NR_023390 NR_023389 uc004avp.5 uc004avs.3 AL389954 AF194971 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101586.1 | |tss_id=hg_101586.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:49, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000412446.5 ENST00000321517.3 NR_023390 NR_023389 uc004avp.5 uc004avs.3 AL389954 AF194971 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000412446.5:0 ENST00000321517.3:0 NR_023390:0 NR_023389:0 uc004avp.5:0 uc004avs.3:0 AL389954:0 AF194971:0 ENST00000429781.1:365 uc004avr.3:365 AK092137:365 ENST00000433656.2:472 uc064unj.1:472 AF170307:472 |
TATA-Box annotation
| Distance to TSS: | -11 |
|---|---|
| Nearest PromoterID: | NR_023390 |
| Entrez ID: | 100128782 |
| Nearest Unigene: | Hs.494549 |
| Nearest Refseq: | NR_023389 |
| Nearest Ensembl: | ENSG00000175611 |
| Gene Name: | long intergenic non-protein coding RNA 476 |
| Gene Alias: | C9orf130 |
| Gene Description: | long intergenic non-protein coding RNA 476 |
| Gene Type: | ncRNA |
| CpG%: | 0.105 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
