Difference between revisions of "TSS:Hg 101642.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.06 |distance_to_tss=390 |entrez_id=51531 |gc_percent=0.527363 |gene_alias=C9orf156|HSPC219|NAP1 |gene_description=tRNA methyltransferase O |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HSPC219= | ||
| + | |NAP1= | ||
| + | |all_trans=ENST00000471580.1:-277 uc064ure.1:-277 ENST00000478126.5:-281 uc064urc.1:-281 ENST00000455506.1:-296 uc064urf.1:-296 ENST00000375117.8:-299 uc064urd.1:-299 KJ898914:-302 CU678254:-302 DQ892983:-304 DQ896231:-304 ENST00000611338.4:-325 uc064urb.1:-325 AY189280:-325 AF151053:-327 AK309270:-338 BC002863:-359 ENST00000375119.7:-379 NM_016481:-379 uc004axv.2:-379 AK000213:-379 AK302701:-379 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| + | |distance=-277 | ||
|distance_to_tss=390 | |distance_to_tss=390 | ||
| + | |end=97922191 | ||
|entrez_id=51531 | |entrez_id=51531 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
|gene_alias=C9orf156|HSPC219|NAP1 | |gene_alias=C9orf156|HSPC219|NAP1 | ||
|gene_description=tRNA methyltransferase O | |gene_description=tRNA methyltransferase O | ||
| − | |gene_name=TRMO | + | |gene_id=51531 |
| + | |gene_name=tRNA methyltransferase O | ||
| + | |gene_source=HGNC:30967 | ||
| + | |gene_symbol=TRMO | ||
| + | |gene_synonyms=HSPC219 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:30967 | ||
|nearest_ensembl=ENSG00000136932 | |nearest_ensembl=ENSG00000136932 | ||
|nearest_promoter_id=NM_001330725 | |nearest_promoter_id=NM_001330725 | ||
|nearest_refseq=NM_016481 | |nearest_refseq=NM_016481 | ||
|nearest_unigene=Hs.9196 | |nearest_unigene=Hs.9196 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=97922168 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000471580.1 uc064ure.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101642.1 | |tss_id=hg_101642.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:52, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000471580.1 uc064ure.1 |
|---|---|
| Distance: | -277 |
| Num_trans: | 23 |
| All_trans: | ENST00000471580.1:-277 uc064ure.1:-277 ENST00000478126.5:-281 uc064urc.1:-281 ENST00000455506.1:-296 uc064urf.1:-296 ENST00000375117.8:-299 uc064urd.1:-299 KJ898914:-302 CU678254:-302 DQ892983:-304 DQ896231:-304 ENST00000611338.4:-325 uc064urb.1:-325 AY189280:-325 AF151053:-327 AK309270:-338 BC002863:-359 ENST00000375119.7:-379 NM_016481:-379 uc004axv.2:-379 AK000213:-379 AK302701:-379 |
TATA-Box annotation
| Distance to TSS: | 390 |
|---|---|
| Nearest PromoterID: | NM_001330725 |
| Entrez ID: | 51531 |
| Nearest Unigene: | Hs.9196 |
| Nearest Refseq: | NM_016481 |
| Nearest Ensembl: | ENSG00000136932 |
| Gene Name: | tRNA methyltransferase O |
| Gene Alias: | C9orf156 |
| Gene Description: | tRNA methyltransferase O |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
