Difference between revisions of "TSS:Hg 101644.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=58 |entrez_id=51531 |gc_percent=0.666667 |gene_alias=C9orf156|HSPC219|NAP1 |gene_description=tRNA methyltransferase O |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HSPC219= | ||
| + | |NAP1= | ||
| + | |all_trans=ENST00000611338.4:0 uc064urb.1:0 AY189280:0 DQ892983:0 KJ898914:0 DQ896231:0 CU678254:0 AF151053:0 AK309270:0 ENST00000375117.8:1 uc064urd.1:1 ENST00000455506.1:4 uc064urf.1:4 BC002863:-16 ENST00000478126.5:19 uc064urc.1:19 ENST00000471580.1:23 uc064ure.1:23 ENST00000375119.7:-36 NM_016481:-36 uc004axv.2:-36 AK000213:-36 AK302701:-36 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=0 | ||
|distance_to_tss=58 | |distance_to_tss=58 | ||
| + | |end=97922534 | ||
|entrez_id=51531 | |entrez_id=51531 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
|gene_alias=C9orf156|HSPC219|NAP1 | |gene_alias=C9orf156|HSPC219|NAP1 | ||
|gene_description=tRNA methyltransferase O | |gene_description=tRNA methyltransferase O | ||
| − | |gene_name=TRMO | + | |gene_id=51531 |
| + | |gene_name=tRNA methyltransferase O | ||
| + | |gene_source=HGNC:30967 | ||
| + | |gene_symbol=TRMO | ||
| + | |gene_synonyms=HSPC219 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:30967 | ||
|nearest_ensembl=ENSG00000136932 | |nearest_ensembl=ENSG00000136932 | ||
|nearest_promoter_id=NM_001330725 | |nearest_promoter_id=NM_001330725 | ||
|nearest_refseq=NM_016481 | |nearest_refseq=NM_016481 | ||
|nearest_unigene=Hs.9196 | |nearest_unigene=Hs.9196 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=97922490 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000611338.4 uc064urb.1 AY189280 DQ892983 KJ898914 DQ896231 CU678254 AF151053 AK309270 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101644.1 | |tss_id=hg_101644.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q6Y2L2 | ||
}} | }} | ||
Revision as of 18:52, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000611338.4 uc064urb.1 AY189280 DQ892983 KJ898914 DQ896231 CU678254 AF151053 AK309270 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000611338.4:0 uc064urb.1:0 AY189280:0 DQ892983:0 KJ898914:0 DQ896231:0 CU678254:0 AF151053:0 AK309270:0 ENST00000375117.8:1 uc064urd.1:1 ENST00000455506.1:4 uc064urf.1:4 BC002863:-16 ENST00000478126.5:19 uc064urc.1:19 ENST00000471580.1:23 uc064ure.1:23 ENST00000375119.7:-36 NM_016481:-36 uc004axv.2:-36 AK000213:-36 AK302701:-36 |
TATA-Box annotation
| Distance to TSS: | 58 |
|---|---|
| Nearest PromoterID: | NM_001330725 |
| Entrez ID: | 51531 |
| Nearest Unigene: | Hs.9196 |
| Nearest Refseq: | NM_016481 |
| Nearest Ensembl: | ENSG00000136932 |
| Gene Name: | tRNA methyltransferase O |
| Gene Alias: | C9orf156 |
| Gene Description: | tRNA methyltransferase O |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
