Difference between revisions of "TSS:Hg 101680.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.085 |distance_to_tss=161 |entrez_id=55357 |gc_percent=0.711443 |gene_alias=PARIS-1|PARIS1|TBC1D2A |gene_description=TBC1 domain family member 2 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PARIS1= | ||
| + | |TBC1D2A= | ||
| + | |all_trans=AB449882:13 ENST00000375064.5:-14 uc064urv.1:-14 AF318370:-14 ENST00000342112.9:-24 uc004ayr.4:-24 AK131290:-33 AB209721:33 BC071978:-64 ENST00000375066.6:-67 uc004ayq.4:-67 AY026527:-67 ENST00000465784.6:-155 NM_001267571:-155 NM_018421:-155 NR_051978:-155 uc011lvb.3:-155 AK298575:162 CU687204:269 AK026105:343 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| + | |distance=13 | ||
|distance_to_tss=161 | |distance_to_tss=161 | ||
| + | |end=98255566 | ||
|entrez_id=55357 | |entrez_id=55357 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
|gene_alias=PARIS-1|PARIS1|TBC1D2A | |gene_alias=PARIS-1|PARIS1|TBC1D2A | ||
|gene_description=TBC1 domain family member 2 | |gene_description=TBC1 domain family member 2 | ||
| − | |gene_name=TBC1D2 | + | |gene_id=55357 |
| + | |gene_name=TBC1 domain family member 2 | ||
| + | |gene_source=HGNC:18026 | ||
| + | |gene_symbol=TBC1D2 | ||
| + | |gene_synonyms=Armus PARIS1 TBC1D2A | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18026 | ||
|nearest_ensembl=ENSG00000095383 | |nearest_ensembl=ENSG00000095383 | ||
|nearest_promoter_id=NM_001267571 | |nearest_promoter_id=NM_001267571 | ||
|nearest_refseq=NM_018421 | |nearest_refseq=NM_018421 | ||
|nearest_unigene=Hs.371016 | |nearest_unigene=Hs.371016 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=98255553 | ||
| + | |strand=- | ||
| + | |transcript_name=AB449882 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101680.1 | |tss_id=hg_101680.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 18:54, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AB449882 |
|---|---|
| Distance: | 13 |
| Num_trans: | 20 |
| All_trans: | AB449882:13 ENST00000375064.5:-14 uc064urv.1:-14 AF318370:-14 ENST00000342112.9:-24 uc004ayr.4:-24 AK131290:-33 AB209721:33 BC071978:-64 ENST00000375066.6:-67 uc004ayq.4:-67 AY026527:-67 ENST00000465784.6:-155 NM_001267571:-155 NM_018421:-155 NR_051978:-155 uc011lvb.3:-155 AK298575:162 CU687204:269 AK026105:343 |
TATA-Box annotation
| Distance to TSS: | 161 |
|---|---|
| Nearest PromoterID: | NM_001267571 |
| Entrez ID: | 55357 |
| Nearest Unigene: | Hs.371016 |
| Nearest Refseq: | NM_018421 |
| Nearest Ensembl: | ENSG00000095383 |
| Gene Name: | TBC1 domain family member 2 |
| Gene Alias: | PARIS-1 |
| Gene Description: | TBC1 domain family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
