Difference between revisions of "TSS:Hg 119558.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.045 |distance_to_tss=462 |entrez_id=29763 |gc_percent=0.686567 |gene_alias=SDPIII |gene_description=protein kinase C and casein kinase substrate in...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000525725.5:0 uc058bbg.1:0 AK300968:-452 AK000577:-453 ENST00000539589.5:-458 ENST00000528462.5:-458 NM_001184975:-458 uc001ndw.4:-458 uc058bbc.1:-458 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| + | |distance=0 | ||
|distance_to_tss=462 | |distance_to_tss=462 | ||
| + | |end=47185423 | ||
|entrez_id=29763 | |entrez_id=29763 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
|gene_alias=SDPIII | |gene_alias=SDPIII | ||
|gene_description=protein kinase C and casein kinase substrate in neurons 3 | |gene_description=protein kinase C and casein kinase substrate in neurons 3 | ||
| − | |gene_name=PACSIN3 | + | |gene_id=29763 |
| + | |gene_name=protein kinase C and casein kinase substrate in neurons 3 | ||
| + | |gene_source=HGNC:8572 | ||
| + | |gene_symbol=PACSIN3 | ||
| + | |gene_synonyms=SDPIII | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8572 | ||
|nearest_ensembl=ENSG00000165912 | |nearest_ensembl=ENSG00000165912 | ||
|nearest_promoter_id=NM_001184975 | |nearest_promoter_id=NM_001184975 | ||
|nearest_refseq=NM_016223 | |nearest_refseq=NM_016223 | ||
|nearest_unigene=Hs.334639 | |nearest_unigene=Hs.334639 | ||
| + | |num_trans=9 | ||
| + | |species=human | ||
| + | |start=47185414 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000525725.5 uc058bbg.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_119558.1 | |tss_id=hg_119558.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=E9PJ75 | ||
}} | }} | ||
Revision as of 07:38, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000525725.5 uc058bbg.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | ENST00000525725.5:0 uc058bbg.1:0 AK300968:-452 AK000577:-453 ENST00000539589.5:-458 ENST00000528462.5:-458 NM_001184975:-458 uc001ndw.4:-458 uc058bbc.1:-458 |
TATA-Box annotation
| Distance to TSS: | 462 |
|---|---|
| Nearest PromoterID: | NM_001184975 |
| Entrez ID: | 29763 |
| Nearest Unigene: | Hs.334639 |
| Nearest Refseq: | NM_016223 |
| Nearest Ensembl: | ENSG00000165912 |
| Gene Name: | protein kinase C and casein kinase substrate in neurons 3 |
| Gene Alias: | SDPIII |
| Gene Description: | protein kinase C and casein kinase substrate in neurons 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
