Difference between revisions of "TSS:Hg 87560.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000519253.5:-112 uc011kyh.3:-112 BC140946:-112 ENST00000523055.5:-130 uc064kpo.1:-130 BC027477:-130 ENST00000518936.5:-134 uc064kpn.1:-134 BC06502...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |RET/PCM-1= | ||
|all_trans=ENST00000519253.5:-112 uc011kyh.3:-112 BC140946:-112 ENST00000523055.5:-130 uc064kpo.1:-130 BC027477:-130 ENST00000518936.5:-134 uc064kpn.1:-134 BC065022:-134 ENST00000518537.5:-141 uc003wyh.4:-141 BC000453:-141 ENST00000517545.5:-150 ENST00000517730.5:-150 uc064kpl.1:-150 uc064kpm.1:-150 BC098391:-150 AK307583:-150 ENST00000518930.1:-172 uc064kpk.1:-172 ENST00000327578.9:-283 NM_006197:-283 NM_001315507:-283 NM_001315508:-283 uc064kpj.1:-283 L27841:-293 ENST00000325083.12:-300 uc003wyi.5:-300 | |all_trans=ENST00000519253.5:-112 uc011kyh.3:-112 BC140946:-112 ENST00000523055.5:-130 uc064kpo.1:-130 BC027477:-130 ENST00000518936.5:-134 uc064kpn.1:-134 BC065022:-134 ENST00000518537.5:-141 uc003wyh.4:-141 BC000453:-141 ENST00000517545.5:-150 ENST00000517730.5:-150 uc064kpl.1:-150 uc064kpm.1:-150 BC098391:-150 AK307583:-150 ENST00000518930.1:-172 uc064kpk.1:-172 ENST00000327578.9:-283 NM_006197:-283 NM_001315507:-283 NM_001315508:-283 uc064kpj.1:-283 L27841:-293 ENST00000325083.12:-300 uc003wyi.5:-300 | ||
|chr=chr8 | |chr=chr8 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=288 | |distance_to_tss=288 | ||
|end=17923150 | |end=17923150 | ||
| + | |end_of_center_position=17923145 | ||
|entrez_id=5108 | |entrez_id=5108 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=PTC4 | + | |gene_alias=PTC4 |
|gene_description=pericentriolar material 1 | |gene_description=pericentriolar material 1 | ||
|gene_id=5108 | |gene_id=5108 | ||
| Line 24: | Line 26: | ||
|species=human | |species=human | ||
|start=17923139 | |start=17923139 | ||
| + | |start_of_center_position=17923144 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000519253.5 uc011kyh.3 BC140946 | |transcript_name=ENST00000519253.5 uc011kyh.3 BC140946 | ||
Revision as of 15:16, 10 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17923144 |
|---|---|
| End of the center position in the TSS region: | 17923145 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000519253.5 uc011kyh.3 BC140946 |
|---|---|
| Distance: | -112 |
| Num_trans: | 28 |
| All_trans: | ENST00000519253.5:-112 uc011kyh.3:-112 BC140946:-112 ENST00000523055.5:-130 uc064kpo.1:-130 BC027477:-130 ENST00000518936.5:-134 uc064kpn.1:-134 BC065022:-134 ENST00000518537.5:-141 uc003wyh.4:-141 BC000453:-141 ENST00000517545.5:-150 ENST00000517730.5:-150 uc064kpl.1:-150 uc064kpm.1:-150 BC098391:-150 AK307583:-150 ENST00000518930.1:-172 uc064kpk.1:-172 ENST00000327578.9:-283 NM_006197:-283 NM_001315507:-283 NM_001315508:-283 uc064kpj.1:-283 L27841:-293 ENST00000325083.12:-300 uc003wyi.5:-300 |
TATA-Box annotation
| Distance to TSS: | 288 |
|---|---|
| Nearest PromoterID: | NM_001315508 |
| Entrez ID: | 5108 |
| Nearest Unigene: | Hs.491148 |
| Nearest Refseq: | NM_006197 |
| Nearest Ensembl: | ENSG00000078674 |
| Gene Name: | pericentriolar material 1 |
| Gene Alias: | PTC4 |
| Gene Description: | pericentriolar material 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
