Difference between revisions of "TSS:Hg 101925.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=79 |entrez_id=7295 |gc_percent=0.706468 |gene_alias=TRDX|TRX|TRX1 |gene_description=thioredoxin |gene_name=TXN |gene_type=prote...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |TRX= | ||
| + | |TRX1= | ||
| + | |all_trans=AK289508:0 D28376:3 BX647247:15 X77584:41 BC054866:49 BC003377:64 J04026:64 ENST00000374517.5:-74 NM_003329:-74 NM_001244938:-74 uc004bep.3:-74 ENST00000374515.9:90 uc004beq.3:90 AF085844:109 AY004872:111 AF313911:111 AF276919:121 JQ313905:121 KJ897717:121 CR407665:121 AF065241:124 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=0 | ||
|distance_to_tss=79 | |distance_to_tss=79 | ||
| + | |end=110256566 | ||
|entrez_id=7295 | |entrez_id=7295 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
|gene_alias=TRDX|TRX|TRX1 | |gene_alias=TRDX|TRX|TRX1 | ||
|gene_description=thioredoxin | |gene_description=thioredoxin | ||
| − | |gene_name=TXN | + | |gene_id=7295 |
| + | |gene_name=thioredoxin | ||
| + | |gene_source=HGNC:12435 | ||
| + | |gene_symbol=TXN | ||
| + | |gene_synonyms=TRX | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12435 | ||
|nearest_ensembl=ENSG00000136810 | |nearest_ensembl=ENSG00000136810 | ||
|nearest_promoter_id=NM_003329 | |nearest_promoter_id=NM_003329 | ||
|nearest_refseq=NM_003329 | |nearest_refseq=NM_003329 | ||
|nearest_unigene=Hs.435136 | |nearest_unigene=Hs.435136 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=110256555 | ||
| + | |strand=- | ||
|tata_box="19(CAGTTTATAAAG,-,0.00),21(GTTTATAAAGGG,+,0.00),21(GTTTATAAAGGG,-,0.00)" | |tata_box="19(CAGTTTATAAAG,-,0.00),21(GTTTATAAAGGG,+,0.00),21(GTTTATAAAGGG,-,0.00)" | ||
| + | |transcript_name=AK289508 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101925.1 | |tss_id=hg_101925.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:04, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK289508 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | AK289508:0 D28376:3 BX647247:15 X77584:41 BC054866:49 BC003377:64 J04026:64 ENST00000374517.5:-74 NM_003329:-74 NM_001244938:-74 uc004bep.3:-74 ENST00000374515.9:90 uc004beq.3:90 AF085844:109 AY004872:111 AF313911:111 AF276919:121 JQ313905:121 KJ897717:121 CR407665:121 AF065241:124 |
TATA-Box annotation
| Distance to TSS: | 79 |
|---|---|
| Nearest PromoterID: | NM_003329 |
| Entrez ID: | 7295 |
| Nearest Unigene: | Hs.435136 |
| Nearest Refseq: | NM_003329 |
| Nearest Ensembl: | ENSG00000136810 |
| Gene Name: | thioredoxin |
| Gene Alias: | TRDX |
| Gene Description: | thioredoxin |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "19(CAGTTTATAAAG,-,0.00),21(GTTTATAAAGGG,+,0.00),21(GTTTATAAAGGG,-,0.00)" |
