Difference between revisions of "TSS:Hg 101969.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.155 |distance_to_tss=-129 |entrez_id=1902 |gc_percent=0.840796 |gene_alias=EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 |gene_description...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GPR26= | ||
| + | |Gpcr26= | ||
| + | |LPA1= | ||
| + | |Mrec1.3= | ||
| + | |VZG1= | ||
| + | |all_trans=ENST00000358883.8:103 NM_001401:103 NM_057159:103 uc004bfc.4:103 AK022808:103 ENST00000374431.7:145 uc004bfb.4:145 BC036034:145 ENST00000441240.1:-218 uc064vaq.1:-218 AK299279:224 AK298590:-461 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| + | |distance=103 | ||
|distance_to_tss=-129 | |distance_to_tss=-129 | ||
| + | |edg-2= | ||
| + | |end=111038240 | ||
|entrez_id=1902 | |entrez_id=1902 | ||
|gc_percent=0.840796 | |gc_percent=0.840796 | ||
|gene_alias=EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 | |gene_alias=EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 | ||
|gene_description=lysophosphatidic acid receptor 1 | |gene_description=lysophosphatidic acid receptor 1 | ||
| − | |gene_name=LPAR1 | + | |gene_id=1902 |
| + | |gene_name=lysophosphatidic acid receptor 1 | ||
| + | |gene_source=HGNC:3166 | ||
| + | |gene_symbol=LPAR1 | ||
| + | |gene_synonyms=GPR26 Gpcr26 LPA1 Mrec1.3 edg-2 rec.1.3 vzg-1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3166 | ||
|nearest_ensembl=ENSG00000198121 | |nearest_ensembl=ENSG00000198121 | ||
|nearest_promoter_id=NM_057159 | |nearest_promoter_id=NM_057159 | ||
|nearest_refseq=NM_001401 | |nearest_refseq=NM_001401 | ||
|nearest_unigene=Hs.126667 | |nearest_unigene=Hs.126667 | ||
| + | |num_trans=12 | ||
| + | |rec.1.3= | ||
| + | |species=human | ||
| + | |start=111038187 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000358883.8 NM_001401 NM_057159 uc004bfc.4 AK022808 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_101969.1 | |tss_id=hg_101969.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5VZX0 Q92633 | ||
| + | |vzg-1= | ||
}} | }} | ||
Revision as of 19:06, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000358883.8 NM_001401 NM_057159 uc004bfc.4 AK022808 |
|---|---|
| Distance: | 103 |
| Num_trans: | 12 |
| All_trans: | ENST00000358883.8:103 NM_001401:103 NM_057159:103 uc004bfc.4:103 AK022808:103 ENST00000374431.7:145 uc004bfb.4:145 BC036034:145 ENST00000441240.1:-218 uc064vaq.1:-218 AK299279:224 AK298590:-461 |
TATA-Box annotation
| Distance to TSS: | -129 |
|---|---|
| Nearest PromoterID: | NM_057159 |
| Entrez ID: | 1902 |
| Nearest Unigene: | Hs.126667 |
| Nearest Refseq: | NM_001401 |
| Nearest Ensembl: | ENSG00000198121 |
| Gene Name: | lysophosphatidic acid receptor 1 |
| Gene Alias: | EDG2 |
| Gene Description: | lysophosphatidic acid receptor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.840796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
