Difference between revisions of "TSS:Hg 94709.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000520576.5:-358 ENST00000517519.5:-358 ENST00000523330.1:-358 NR_024479:-358 uc003yqa.1:-358 uc064pxf.1:-358 uc003yqb.1:-358 AY211906:-358 AY2119...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HCCC11_v1= | ||
| + | |HCCC11_v2= | ||
|all_trans=ENST00000520576.5:-358 ENST00000517519.5:-358 ENST00000523330.1:-358 NR_024479:-358 uc003yqa.1:-358 uc064pxf.1:-358 uc003yqb.1:-358 AY211906:-358 AY211907:-358 AY211908:-358 AY225521:-358 | |all_trans=ENST00000520576.5:-358 ENST00000517519.5:-358 ENST00000523330.1:-358 NR_024479:-358 uc003yqa.1:-358 uc064pxf.1:-358 uc003yqb.1:-358 AY211906:-358 AY211907:-358 AY211908:-358 AY225521:-358 | ||
|chr=chr8 | |chr=chr8 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=366 | |distance_to_tss=366 | ||
|end=123202385 | |end=123202385 | ||
| + | |end_of_center_position=123202377 | ||
|entrez_id=100131726 | |entrez_id=100131726 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
| − | |gene_alias=HCCC11 | + | |gene_alias=HCCC11 |
|gene_description=FAM83A antisense RNA 1 | |gene_description=FAM83A antisense RNA 1 | ||
|gene_id=100131726 | |gene_id=100131726 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=123202368 | |start=123202368 | ||
| + | |start_of_center_position=123202376 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000520576.5 ENST00000517519.5 ENST00000523330.1 NR_024479 uc003yqa.1 uc064pxf.1 uc003yqb.1 AY211906 AY211907 AY211908 AY225521 | |transcript_name=ENST00000520576.5 ENST00000517519.5 ENST00000523330.1 NR_024479 uc003yqa.1 uc064pxf.1 uc003yqb.1 AY211906 AY211907 AY211908 AY225521 | ||
Revision as of 00:24, 11 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 123202376 |
|---|---|
| End of the center position in the TSS region: | 123202377 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000520576.5 ENST00000517519.5 ENST00000523330.1 NR_024479 uc003yqa.1 uc064pxf.1 uc003yqb.1 AY211906 AY211907 AY211908 AY225521 |
|---|---|
| Distance: | -358 |
| Num_trans: | 11 |
| All_trans: | ENST00000520576.5:-358 ENST00000517519.5:-358 ENST00000523330.1:-358 NR_024479:-358 uc003yqa.1:-358 uc064pxf.1:-358 uc003yqb.1:-358 AY211906:-358 AY211907:-358 AY211908:-358 AY225521:-358 |
TATA-Box annotation
| Distance to TSS: | 366 |
|---|---|
| Nearest PromoterID: | NR_024479 |
| Entrez ID: | 100131726 |
| Nearest Unigene: | Hs.660862 |
| Nearest Refseq: | NR_024479 |
| Nearest Ensembl: | ENSG00000204949 |
| Gene Name: | FAM83A antisense RNA 1 |
| Gene Alias: | HCCC11 |
| Gene Description: | FAM83A antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.025 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
