Difference between revisions of "TSS:Hg 121694.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=13682 |entrez_id=54843 |gc_percent=0.373134 |gene_alias=CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A |gene_description=synaptotagmi...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |EXO4= | ||
| + | |PPP1R151= | ||
| + | |SGA72M= | ||
| + | |SLP2= | ||
| + | |SLP2A= | ||
| + | |all_trans=ENST00000529662.1:240 uc058ged.1:240 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=240 | ||
|distance_to_tss=13682 | |distance_to_tss=13682 | ||
| + | |end=85705502 | ||
|entrez_id=54843 | |entrez_id=54843 | ||
|gc_percent=0.373134 | |gc_percent=0.373134 | ||
|gene_alias=CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A | |gene_alias=CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A | ||
|gene_description=synaptotagmin like 2 | |gene_description=synaptotagmin like 2 | ||
| − | |gene_name=SYTL2 | + | |gene_id=54843 |
| + | |gene_name=synaptotagmin like 2 | ||
| + | |gene_source=HGNC:15585 | ||
| + | |gene_symbol=SYTL2 | ||
| + | |gene_synonyms=CHR11SYT FLJ20163 FLJ21219 KIAA1597 MGC102768 PPP1R151 SGA72M SLP2 exophilin-4 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15585 | ||
|nearest_ensembl=ENSG00000137501 | |nearest_ensembl=ENSG00000137501 | ||
|nearest_promoter_id=NM_001289610 | |nearest_promoter_id=NM_001289610 | ||
|nearest_refseq=NM_032379 | |nearest_refseq=NM_032379 | ||
|nearest_unigene=Hs.369520 | |nearest_unigene=Hs.369520 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=85705494 | ||
| + | |strand=- | ||
|tata_box="60(TGCTCTAAAAAG,-,0.00)" | |tata_box="60(TGCTCTAAAAAG,-,0.00)" | ||
| + | |transcript_name=ENST00000529662.1 uc058ged.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_121694.1 | |tss_id=hg_121694.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 09:10, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000529662.1 uc058ged.1 |
|---|---|
| Distance: | 240 |
| Num_trans: | 2 |
| All_trans: | ENST00000529662.1:240 uc058ged.1:240 |
TATA-Box annotation
| Distance to TSS: | 13682 |
|---|---|
| Nearest PromoterID: | NM_001289610 |
| Entrez ID: | 54843 |
| Nearest Unigene: | Hs.369520 |
| Nearest Refseq: | NM_032379 |
| Nearest Ensembl: | ENSG00000137501 |
| Gene Name: | synaptotagmin like 2 |
| Gene Alias: | CHR11SYT |
| Gene Description: | synaptotagmin like 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.373134 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "60(TGCTCTAAAAAG,-,0.00)" |
