Difference between revisions of "TSS:Hg 121706.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=18 |entrez_id=54843 |gc_percent=0.467662 |gene_alias=CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A |gene_description=synaptotagmin li...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |EXO4= | ||
| + | |PPP1R151= | ||
| + | |SGA72M= | ||
| + | |SLP2= | ||
| + | |SLP2A= | ||
| + | |all_trans=NM_206930:0 NM_001289609:0 NM_001162952:0 ENST00000526999.5:-27 uc058gei.1:-27 ENST00000527794.5:86 uc058gef.1:86 ENST00000534554.1:134 NM_001289610:134 NM_206929:134 uc058gem.1:134 ENST00000389958.7:146 ENST00000528566.1:146 uc001pay.5:146 uc058gen.1:146 AK092121:146 ENST00000533577.1:164 uc058gel.1:164 ENST00000529581.5:176 uc001pax.5:176 AK074737:176 ENST00000533892.5:216 uc010rte.4:216 AK298604:216 ENST00000533057.6:232 uc058gee.1:232 ENST00000532995.5:239 uc058gdv.1:239 BC068495:239 uc058geh.1:258 BC110315:435 | ||
| + | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=0 | ||
|distance_to_tss=18 | |distance_to_tss=18 | ||
| + | |end=85719350 | ||
|entrez_id=54843 | |entrez_id=54843 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
|gene_alias=CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A | |gene_alias=CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A | ||
|gene_description=synaptotagmin like 2 | |gene_description=synaptotagmin like 2 | ||
| − | |gene_name=SYTL2 | + | |gene_id=54843 |
| + | |gene_name=synaptotagmin like 2 | ||
| + | |gene_source=HGNC:15585 | ||
| + | |gene_symbol=SYTL2 | ||
| + | |gene_synonyms=CHR11SYT FLJ20163 FLJ21219 KIAA1597 MGC102768 PPP1R151 SGA72M SLP2 exophilin-4 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15585 | ||
|nearest_ensembl=ENSG00000137501 | |nearest_ensembl=ENSG00000137501 | ||
|nearest_promoter_id=NM_001162952 | |nearest_promoter_id=NM_001162952 | ||
|nearest_refseq=NM_032379 | |nearest_refseq=NM_032379 | ||
|nearest_unigene=Hs.369520 | |nearest_unigene=Hs.369520 | ||
| + | |num_trans=31 | ||
| + | |species=human | ||
| + | |start=85719313 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_206930 NM_001289609 NM_001162952 | ||
| + | |tss_classification=no | ||
|tss_id=hg_121706.1 | |tss_id=hg_121706.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9HCH5 | ||
}} | }} | ||
Revision as of 09:10, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_206930 NM_001289609 NM_001162952 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | NM_206930:0 NM_001289609:0 NM_001162952:0 ENST00000526999.5:-27 uc058gei.1:-27 ENST00000527794.5:86 uc058gef.1:86 ENST00000534554.1:134 NM_001289610:134 NM_206929:134 uc058gem.1:134 ENST00000389958.7:146 ENST00000528566.1:146 uc001pay.5:146 uc058gen.1:146 AK092121:146 ENST00000533577.1:164 uc058gel.1:164 ENST00000529581.5:176 uc001pax.5:176 AK074737:176 ENST00000533892.5:216 uc010rte.4:216 AK298604:216 ENST00000533057.6:232 uc058gee.1:232 ENST00000532995.5:239 uc058gdv.1:239 BC068495:239 uc058geh.1:258 BC110315:435 |
TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_001162952 |
| Entrez ID: | 54843 |
| Nearest Unigene: | Hs.369520 |
| Nearest Refseq: | NM_032379 |
| Nearest Ensembl: | ENSG00000137501 |
| Gene Name: | synaptotagmin like 2 |
| Gene Alias: | CHR11SYT |
| Gene Description: | synaptotagmin like 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
