Difference between revisions of "TSS:Hg 100.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-268 |entrez_id=643965 |gc_percent=0.686567 |gene_alias=- |gene_description=transmembrane protein 88B |gene_name=TMEM88B |gene_t...") |
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| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000378821.3:264 NM_001146685:264 uc010nyp.2:264 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=264 | ||
|distance_to_tss=-268 | |distance_to_tss=-268 | ||
| + | |end=1425864 | ||
|entrez_id=643965 | |entrez_id=643965 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=transmembrane protein 88B | |gene_description=transmembrane protein 88B | ||
| − | |gene_name=TMEM88B | + | |gene_id=643965 |
| + | |gene_name=transmembrane protein 88B | ||
| + | |gene_source=HGNC:37099 | ||
| + | |gene_symbol=TMEM88B | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:37099 | ||
|nearest_ensembl=ENSG00000205116 | |nearest_ensembl=ENSG00000205116 | ||
|nearest_promoter_id=NM_001146685 | |nearest_promoter_id=NM_001146685 | ||
|nearest_refseq=NM_001146685 | |nearest_refseq=NM_001146685 | ||
|nearest_unigene=Hs.729765 | |nearest_unigene=Hs.729765 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=1425855 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000378821.3 NM_001146685 uc010nyp.2 | ||
| + | |tss_classification=no | ||
|tss_id=hg_100.1 | |tss_id=hg_100.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A6NKF7 | ||
}} | }} | ||
Revision as of 16:59, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000378821.3 NM_001146685 uc010nyp.2 |
|---|---|
| Distance: | 264 |
| Num_trans: | 3 |
| All_trans: | ENST00000378821.3:264 NM_001146685:264 uc010nyp.2:264 |
TATA-Box annotation
| Distance to TSS: | -268 |
|---|---|
| Nearest PromoterID: | NM_001146685 |
| Entrez ID: | 643965 |
| Nearest Unigene: | Hs.729765 |
| Nearest Refseq: | NM_001146685 |
| Nearest Ensembl: | ENSG00000205116 |
| Gene Name: | transmembrane protein 88B |
| Gene Alias: | - |
| Gene Description: | transmembrane protein 88B |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
