Difference between revisions of "TSS:Hg 102023.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=19 |entrez_id=22949 |gc_percent=0.60199 |gene_alias=LTB4DH|PGR1|ZADH3 |gene_description=prostaglandin reductase 1 |gene_name=PT...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PGR1= | ||
| + | |ZADH3= | ||
| + | |all_trans=ENST00000538962.5:0 ENST00000407693.6:0 ENST00000374313.5:0 NM_001146109:0 NM_001146108:0 uc011lwr.2:0 uc004bfi.3:0 uc064vbd.1:0 AK298379:0 AK289597:0 AK309866:0 ENST00000422125.1:119 uc064vbc.1:119 AK309450:167 AK091948:169 D49387:189 NM_012212:383 BC035228:383 ENST00000309195.9:407 ENST00000374308.1:407 uc004bfh.3:407 uc064vbe.1:407 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=0 | ||
|distance_to_tss=19 | |distance_to_tss=19 | ||
| + | |end=111599858 | ||
|entrez_id=22949 | |entrez_id=22949 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
|gene_alias=LTB4DH|PGR1|ZADH3 | |gene_alias=LTB4DH|PGR1|ZADH3 | ||
|gene_description=prostaglandin reductase 1 | |gene_description=prostaglandin reductase 1 | ||
| − | |gene_name=PTGR1 | + | |gene_id=22949 |
| + | |gene_name=prostaglandin reductase 1 | ||
| + | |gene_source=HGNC:18429 | ||
| + | |gene_symbol=PTGR1 | ||
| + | |gene_synonyms=ZADH3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18429 | ||
|nearest_ensembl=ENSG00000106853 | |nearest_ensembl=ENSG00000106853 | ||
|nearest_promoter_id=NM_001146108 | |nearest_promoter_id=NM_001146108 | ||
|nearest_refseq=NM_012212 | |nearest_refseq=NM_012212 | ||
|nearest_unigene=Hs.584864 | |nearest_unigene=Hs.584864 | ||
| + | |num_trans=22 | ||
| + | |species=human | ||
| + | |start=111599813 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000538962.5 ENST00000407693.6 ENST00000374313.5 NM_001146109 NM_001146108 uc011lwr.2 uc004bfi.3 uc064vbd.1 AK298379 AK289597 AK309866 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102023.1 | |tss_id=hg_102023.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q14914 | ||
}} | }} | ||
Revision as of 19:08, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000538962.5 ENST00000407693.6 ENST00000374313.5 NM_001146109 NM_001146108 uc011lwr.2 uc004bfi.3 uc064vbd.1 AK298379 AK289597 AK309866 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENST00000538962.5:0 ENST00000407693.6:0 ENST00000374313.5:0 NM_001146109:0 NM_001146108:0 uc011lwr.2:0 uc004bfi.3:0 uc064vbd.1:0 AK298379:0 AK289597:0 AK309866:0 ENST00000422125.1:119 uc064vbc.1:119 AK309450:167 AK091948:169 D49387:189 NM_012212:383 BC035228:383 ENST00000309195.9:407 ENST00000374308.1:407 uc004bfh.3:407 uc064vbe.1:407 |
TATA-Box annotation
| Distance to TSS: | 19 |
|---|---|
| Nearest PromoterID: | NM_001146108 |
| Entrez ID: | 22949 |
| Nearest Unigene: | Hs.584864 |
| Nearest Refseq: | NM_012212 |
| Nearest Ensembl: | ENSG00000106853 |
| Gene Name: | prostaglandin reductase 1 |
| Gene Alias: | LTB4DH |
| Gene Description: | prostaglandin reductase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
