Difference between revisions of "TSS:Hg 102024.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.085 |distance_to_tss=-10 |entrez_id=22949 |gc_percent=0.58209 |gene_alias=LTB4DH|PGR1|ZADH3 |gene_description=prostaglandin reductase 1 |gene_name=P...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PGR1= | ||
| + | |ZADH3= | ||
| + | |all_trans=ENST00000538962.5:5 ENST00000407693.6:5 NM_001146109:5 NM_001146108:5 uc011lwr.2:5 uc004bfi.3:5 AK289597:5 AK298379:25 AK309866:39 ENST00000374313.5:44 uc064vbd.1:44 ENST00000422125.1:165 uc064vbc.1:165 AK309450:213 AK091948:215 D49387:235 NM_012212:429 BC035228:429 ENST00000309195.9:453 ENST00000374308.1:453 uc004bfh.3:453 uc064vbe.1:453 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| + | |distance=5 | ||
|distance_to_tss=-10 | |distance_to_tss=-10 | ||
| + | |end=111599870 | ||
|entrez_id=22949 | |entrez_id=22949 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
|gene_alias=LTB4DH|PGR1|ZADH3 | |gene_alias=LTB4DH|PGR1|ZADH3 | ||
|gene_description=prostaglandin reductase 1 | |gene_description=prostaglandin reductase 1 | ||
| − | |gene_name=PTGR1 | + | |gene_id=22949 |
| + | |gene_name=prostaglandin reductase 1 | ||
| + | |gene_source=HGNC:18429 | ||
| + | |gene_symbol=PTGR1 | ||
| + | |gene_synonyms=ZADH3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18429 | ||
|nearest_ensembl=ENSG00000106853 | |nearest_ensembl=ENSG00000106853 | ||
|nearest_promoter_id=NM_001146109 | |nearest_promoter_id=NM_001146109 | ||
|nearest_refseq=NM_012212 | |nearest_refseq=NM_012212 | ||
|nearest_unigene=Hs.584864 | |nearest_unigene=Hs.584864 | ||
| + | |num_trans=22 | ||
| + | |species=human | ||
| + | |start=111599859 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000538962.5 ENST00000407693.6 NM_001146109 NM_001146108 uc011lwr.2 uc004bfi.3 AK289597 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102024.1 | |tss_id=hg_102024.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q14914 | ||
}} | }} | ||
Revision as of 19:08, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000538962.5 ENST00000407693.6 NM_001146109 NM_001146108 uc011lwr.2 uc004bfi.3 AK289597 |
|---|---|
| Distance: | 5 |
| Num_trans: | 22 |
| All_trans: | ENST00000538962.5:5 ENST00000407693.6:5 NM_001146109:5 NM_001146108:5 uc011lwr.2:5 uc004bfi.3:5 AK289597:5 AK298379:25 AK309866:39 ENST00000374313.5:44 uc064vbd.1:44 ENST00000422125.1:165 uc064vbc.1:165 AK309450:213 AK091948:215 D49387:235 NM_012212:429 BC035228:429 ENST00000309195.9:453 ENST00000374308.1:453 uc004bfh.3:453 uc064vbe.1:453 |
TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_001146109 |
| Entrez ID: | 22949 |
| Nearest Unigene: | Hs.584864 |
| Nearest Refseq: | NM_012212 |
| Nearest Ensembl: | ENSG00000106853 |
| Gene Name: | prostaglandin reductase 1 |
| Gene Alias: | LTB4DH |
| Gene Description: | prostaglandin reductase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
