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Difference between revisions of "TSS:Mm 100284.1"

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(Created page with "{{TSSDetail |all_trans=ENSMUST00000026649.13:0 ENSMUST00000132298.1:0 ENSMUST00000177131.7:0 NM_009304:0 uc007mnw.2:0 uc007mnx.2:0 uc007mny.2:0 AK150234:0 AK004030:0 AK170681:...")
 
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{{TSSDetail
 
{{TSSDetail
 
|all_trans=ENSMUST00000026649.13:0 ENSMUST00000132298.1:0 ENSMUST00000177131.7:0 NM_009304:0 uc007mnw.2:0 uc007mnx.2:0 uc007mny.2:0 AK150234:0 AK004030:0 AK170681:0 AK089424:0 AF151985:0 BC004829:0 AF364049:2 ENSMUST00000177241.1:8 ENSMUST00000120928.1:11 AK157343:11 AJ002307:16 ENSMUST00000175737.1:27 AK185198:55
 
|all_trans=ENSMUST00000026649.13:0 ENSMUST00000132298.1:0 ENSMUST00000177131.7:0 NM_009304:0 uc007mnw.2:0 uc007mnx.2:0 uc007mny.2:0 AK150234:0 AK004030:0 AK170681:0 AK089424:0 AF151985:0 BC004829:0 AF364049:2 ENSMUST00000177241.1:8 ENSMUST00000120928.1:11 AK157343:11 AJ002307:16 ENSMUST00000175737.1:27 AK185198:55
 +
|cellugyrin=
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.135
 
|cpg_percent=0.135
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|distance_to_tss=2
 
|distance_to_tss=2
 
|end=117809685
 
|end=117809685
 +
|end_of_center_position=117809670
 
|entrez_id=20973
 
|entrez_id=20973
 
|gc_percent=0.736318
 
|gc_percent=0.736318
−
|gene_alias=Clast2|cellugyrin
+
|gene_alias=Clast2
 
|gene_description=synaptogyrin 2
 
|gene_description=synaptogyrin 2
 
|gene_id=20973 71562
 
|gene_id=20973 71562
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|species=mouse
 
|species=mouse
 
|start=117809653
 
|start=117809653
 +
|start_of_center_position=117809669
 
|strand=+
 
|strand=+
 
|transcript_name=ENSMUST00000026649.13 ENSMUST00000132298.1 ENSMUST00000177131.7 NM_009304 uc007mnw.2 uc007mnx.2 uc007mny.2 AK150234 AK004030 AK170681 AK089424 AF151985 BC004829
 
|transcript_name=ENSMUST00000026649.13 ENSMUST00000132298.1 ENSMUST00000177131.7 NM_009304 uc007mnw.2 uc007mnx.2 uc007mny.2 AK150234 AK004030 AK170681 AK089424 AF151985 BC004829

Revision as of 12:38, 12 May 2019

Basic information about the TSS

TSS ID:mm_100284.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:117809653
End:117809685
Strand:+
TSS Score:1
Start of the center position in the TSS region:117809669
End of the center position in the TSS region:117809670



Gene and protein annotation

Transcript_name:ENSMUST00000026649.13 ENSMUST00000132298.1 ENSMUST00000177131.7 NM_009304 uc007mnw.2 uc007mnx.2 uc007mny.2 AK150234 AK004030 AK170681 AK089424 AF151985 BC004829
Distance:0
GeneID:20973 71562
HGNC/MGI_ID:MGI:1328324 MGI:2448704 MGI:5313155
UniProt_ID:H3BIZ8 H3BKF4 O55101
Gene_name:arylformamidase; predicted gene 20708; synaptogyrin 2
Gene_symbol:Afmid Gm20708 Syngr2
Gene_synonyms:9030621K19Rik Clast2 Kf cellugyrin formylase formylkynureninase kynurenine_formamidase
Gene_source:MGI:1328324 MGI:2448704 MGI:5313155



Transcript annotation

Transcript_name:ENSMUST00000026649.13 ENSMUST00000132298.1 ENSMUST00000177131.7 NM_009304 uc007mnw.2 uc007mnx.2 uc007mny.2 AK150234 AK004030 AK170681 AK089424 AF151985 BC004829
Distance:0
Num_trans:20
All_trans:ENSMUST00000026649.13:0 ENSMUST00000132298.1:0 ENSMUST00000177131.7:0 NM_009304:0 uc007mnw.2:0 uc007mnx.2:0 uc007mny.2:0 AK150234:0 AK004030:0 AK170681:0 AK089424:0 AF151985:0 BC004829:0 AF364049:2 ENSMUST00000177241.1:8 ENSMUST00000120928.1:11 AK157343:11 AJ002307:16 ENSMUST00000175737.1:27 AK185198:55



TATA-Box annotation

Distance to TSS:2
Nearest PromoterID:NM_009304
Entrez ID:20973
Nearest Unigene:Mm.468228
Nearest Refseq:NM_009304
Nearest Ensembl:ENSMUSG00000048277
Gene Name:arylformamidase; predicted gene 20708; synaptogyrin 2
Gene Alias:Clast2
Gene Description:synaptogyrin 2
Gene Type:protein-coding
CpG%:0.135
GC%:0.736318
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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