Difference between revisions of "TSS:Hg 10000.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=3197 |entrez_id=388591 |gc_percent=0.761194 |gene_alias=C1orf188 |gene_description=ring finger protein 207 |gene_name=RNF207 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000465335.1:-13 uc057btj.1:-13 ENST00000471204.5:32 uc057btg.1:32 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=-13 | ||
|distance_to_tss=3197 | |distance_to_tss=3197 | ||
| + | |end=6209376 | ||
|entrez_id=388591 | |entrez_id=388591 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
|gene_alias=C1orf188 | |gene_alias=C1orf188 | ||
|gene_description=ring finger protein 207 | |gene_description=ring finger protein 207 | ||
| − | |gene_name= | + | |gene_id=6146 |
| + | |gene_name=ribosomal protein L22 | ||
| + | |gene_source=HGNC:10315 | ||
| + | |gene_symbol=RPL22 | ||
| + | |gene_synonyms=EAP L22 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10315 | ||
|nearest_ensembl=ENSG00000158286 | |nearest_ensembl=ENSG00000158286 | ||
|nearest_promoter_id=NM_207396 | |nearest_promoter_id=NM_207396 | ||
|nearest_refseq=NM_173795 | |nearest_refseq=NM_173795 | ||
|nearest_unigene=Hs.716549 | |nearest_unigene=Hs.716549 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=6209275 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000465335.1 uc057btj.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_10000.1 | |tss_id=hg_10000.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=K7EJT5 | ||
}} | }} | ||
Revision as of 16:59, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000465335.1 uc057btj.1 |
|---|---|
| Distance: | -13 |
| Num_trans: | 4 |
| All_trans: | ENST00000465335.1:-13 uc057btj.1:-13 ENST00000471204.5:32 uc057btg.1:32 |
TATA-Box annotation
| Distance to TSS: | 3197 |
|---|---|
| Nearest PromoterID: | NM_207396 |
| Entrez ID: | 388591 |
| Nearest Unigene: | Hs.716549 |
| Nearest Refseq: | NM_173795 |
| Nearest Ensembl: | ENSG00000158286 |
| Gene Name: | ribosomal protein L22 |
| Gene Alias: | C1orf188 |
| Gene Description: | ring finger protein 207 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
