Difference between revisions of "TSS:Mm 101704.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK047085:-12 AK136889:-40 AF233775:-51 AF233776:-51 AF233777:-51 AF233778:-51 AF233779:-51 AF233780:-51 AF233781:-51 AF233782:-51 AF233783:-51 AF233784:...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Gabrg-2= | ||
|all_trans=AK047085:-12 AK136889:-40 AF233775:-51 AF233776:-51 AF233777:-51 AF233778:-51 AF233779:-51 AF233780:-51 AF233781:-51 AF233782:-51 AF233783:-51 AF233784:-51 AF233785:-51 AF233786:-51 AF233787:-51 AF233788:-51 AF233789:-51 AF233790:-51 AF233791:-51 AF233792:-51 AF233793:-51 AF233794:-51 AF233795:-51 AF233796:-51 AF233797:-51 AF233798:-51 AF233799:-51 AF233800:-51 AF233801:-51 AF233802:-51 AK141129:-75 ENSMUST00000109290.1:-77 AK049857:-77 M86572:-228 ENSMUST00000070735.9:-253 BC031762:-253 M62374:-399 AK034338:-405 NM_008073:-435 NM_177408:-435 uc007imb.2:-435 uc007imc.3:-435 uc007imd.2:-435 uc007ime.2:-435 | |all_trans=AK047085:-12 AK136889:-40 AF233775:-51 AF233776:-51 AF233777:-51 AF233778:-51 AF233779:-51 AF233780:-51 AF233781:-51 AF233782:-51 AF233783:-51 AF233784:-51 AF233785:-51 AF233786:-51 AF233787:-51 AF233788:-51 AF233789:-51 AF233790:-51 AF233791:-51 AF233792:-51 AF233793:-51 AF233794:-51 AF233795:-51 AF233796:-51 AF233797:-51 AF233798:-51 AF233799:-51 AF233800:-51 AF233801:-51 AF233802:-51 AK141129:-75 ENSMUST00000109290.1:-77 AK049857:-77 M86572:-228 ENSMUST00000070735.9:-253 BC031762:-253 M62374:-399 AK034338:-405 NM_008073:-435 NM_177408:-435 uc007imb.2:-435 uc007imc.3:-435 uc007imd.2:-435 uc007ime.2:-435 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=440 | |distance_to_tss=440 | ||
|end=42000279 | |end=42000279 | ||
| + | |end_of_center_position=42000274 | ||
|entrez_id=14406 | |entrez_id=14406 | ||
| + | |gamma2= | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
| − | |gene_alias=GABAA-R | + | |gene_alias=GABAA-R |
|gene_description="gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2" | |gene_description="gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2" | ||
|gene_id=14406 | |gene_id=14406 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=42000268 | |start=42000268 | ||
| + | |start_of_center_position=42000273 | ||
|strand=- | |strand=- | ||
|transcript_name=AK047085 | |transcript_name=AK047085 | ||
Revision as of 23:26, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 42000273 |
|---|---|
| End of the center position in the TSS region: | 42000274 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK047085 |
|---|---|
| Distance: | -12 |
| Num_trans: | 44 |
| All_trans: | AK047085:-12 AK136889:-40 AF233775:-51 AF233776:-51 AF233777:-51 AF233778:-51 AF233779:-51 AF233780:-51 AF233781:-51 AF233782:-51 AF233783:-51 AF233784:-51 AF233785:-51 AF233786:-51 AF233787:-51 AF233788:-51 AF233789:-51 AF233790:-51 AF233791:-51 AF233792:-51 AF233793:-51 AF233794:-51 AF233795:-51 AF233796:-51 AF233797:-51 AF233798:-51 AF233799:-51 AF233800:-51 AF233801:-51 AF233802:-51 AK141129:-75 ENSMUST00000109290.1:-77 AK049857:-77 M86572:-228 ENSMUST00000070735.9:-253 BC031762:-253 M62374:-399 AK034338:-405 NM_008073:-435 NM_177408:-435 uc007imb.2:-435 uc007imc.3:-435 uc007imd.2:-435 uc007ime.2:-435 |
TATA-Box annotation
| Distance to TSS: | 440 |
|---|---|
| Nearest PromoterID: | NM_177408 |
| Entrez ID: | 14406 |
| Nearest Unigene: | Mm.5309 |
| Nearest Refseq: | NM_008073 |
| Nearest Ensembl: | ENSMUSG00000020436 |
| Gene Name: | "gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2" |
| Gene Alias: | GABAA-R |
| Gene Description: | "gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2" |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
