Difference between revisions of "TSS:Hg 102056.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=-136 |entrez_id=64420 |gc_percent=0.696517 |gene_alias=- |gene_description=sushi domain containing 1 |gene_name=SUSD1 |gene_typ...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000374270.7:12 uc004bfu.5:12 ENST00000374263.7:123 NM_001282640:123 NM_022486:123 NM_001282643:123 uc010muj.5:123 AK292868:123 ENST00000374264.6:153 uc010mui.5:153 BC060770:153 AY358746:155 ENST00000355396.7:235 uc064vbs.1:235 AK056704:235 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=12 | ||
|distance_to_tss=-136 | |distance_to_tss=-136 | ||
| + | |end=112175446 | ||
|entrez_id=64420 | |entrez_id=64420 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=sushi domain containing 1 | |gene_description=sushi domain containing 1 | ||
| − | |gene_name=SUSD1 | + | |gene_id=64420 |
| + | |gene_name=sushi domain containing 1 | ||
| + | |gene_source=HGNC:25413 | ||
| + | |gene_symbol=SUSD1 | ||
| + | |gene_synonyms=DKFZP761E1824 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25413 | ||
|nearest_ensembl=ENSG00000106868 | |nearest_ensembl=ENSG00000106868 | ||
|nearest_promoter_id=NM_001282640 | |nearest_promoter_id=NM_001282640 | ||
|nearest_refseq=NM_022486 | |nearest_refseq=NM_022486 | ||
|nearest_unigene=Hs.494827 | |nearest_unigene=Hs.494827 | ||
| + | |num_trans=15 | ||
| + | |species=human | ||
| + | |start=112175419 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000374270.7 uc004bfu.5 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102056.1 | |tss_id=hg_102056.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q6UWL2 | ||
}} | }} | ||
Revision as of 19:10, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000374270.7 uc004bfu.5 |
|---|---|
| Distance: | 12 |
| Num_trans: | 15 |
| All_trans: | ENST00000374270.7:12 uc004bfu.5:12 ENST00000374263.7:123 NM_001282640:123 NM_022486:123 NM_001282643:123 uc010muj.5:123 AK292868:123 ENST00000374264.6:153 uc010mui.5:153 BC060770:153 AY358746:155 ENST00000355396.7:235 uc064vbs.1:235 AK056704:235 |
TATA-Box annotation
| Distance to TSS: | -136 |
|---|---|
| Nearest PromoterID: | NM_001282640 |
| Entrez ID: | 64420 |
| Nearest Unigene: | Hs.494827 |
| Nearest Refseq: | NM_022486 |
| Nearest Ensembl: | ENSG00000106868 |
| Gene Name: | sushi domain containing 1 |
| Gene Alias: | - |
| Gene Description: | sushi domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
