Difference between revisions of "TSS:Hg 102069.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=36 |entrez_id=9991 |gc_percent=0.776119 |gene_alias=ROD1 |gene_description=polypyrimidine tract binding protein 3 |gene_name=PTB...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000374255.6:0 ENST00000450374.1:0 uc004bfw.4:0 uc064vcg.1:0 BC039896:0 ENST00000334318.10:-12 NM_005156:-12 NM_001163790:-12 NM_001163788:-12 NM_001244897:-12 NM_001244896:-12 uc004bfx.4:-12 ENST00000374257.5:-15 uc011lwu.3:-15 CR749471:18 ENST00000343327.6:26 uc004bfy.4:26 AK001685:26 AK302558:26 ENST00000487997.1:58 uc064vcd.1:58 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=0 | ||
|distance_to_tss=36 | |distance_to_tss=36 | ||
| + | |end=112333652 | ||
|entrez_id=9991 | |entrez_id=9991 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
|gene_alias=ROD1 | |gene_alias=ROD1 | ||
|gene_description=polypyrimidine tract binding protein 3 | |gene_description=polypyrimidine tract binding protein 3 | ||
| − | |gene_name=PTBP3 | + | |gene_id=9991 |
| + | |gene_name=polypyrimidine tract binding protein 3 | ||
| + | |gene_source=HGNC:10253 | ||
| + | |gene_symbol=PTBP3 | ||
| + | |gene_synonyms=DKFZp781I1117 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10253 | ||
|nearest_ensembl=ENSG00000119314 | |nearest_ensembl=ENSG00000119314 | ||
|nearest_promoter_id=NM_001163790 | |nearest_promoter_id=NM_001163790 | ||
|nearest_refseq=NM_005156 | |nearest_refseq=NM_005156 | ||
|nearest_unigene=Hs.269988 | |nearest_unigene=Hs.269988 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=112333603 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000374255.6 ENST00000450374.1 uc004bfw.4 uc064vcg.1 BC039896 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102069.1 | |tss_id=hg_102069.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R163 B1ALY4 O95758 | ||
}} | }} | ||
Revision as of 19:10, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000374255.6 ENST00000450374.1 uc004bfw.4 uc064vcg.1 BC039896 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000374255.6:0 ENST00000450374.1:0 uc004bfw.4:0 uc064vcg.1:0 BC039896:0 ENST00000334318.10:-12 NM_005156:-12 NM_001163790:-12 NM_001163788:-12 NM_001244897:-12 NM_001244896:-12 uc004bfx.4:-12 ENST00000374257.5:-15 uc011lwu.3:-15 CR749471:18 ENST00000343327.6:26 uc004bfy.4:26 AK001685:26 AK302558:26 ENST00000487997.1:58 uc064vcd.1:58 |
TATA-Box annotation
| Distance to TSS: | 36 |
|---|---|
| Nearest PromoterID: | NM_001163790 |
| Entrez ID: | 9991 |
| Nearest Unigene: | Hs.269988 |
| Nearest Refseq: | NM_005156 |
| Nearest Ensembl: | ENSG00000119314 |
| Gene Name: | polypyrimidine tract binding protein 3 |
| Gene Alias: | ROD1 |
| Gene Description: | polypyrimidine tract binding protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
