Difference between revisions of "TSS:Hg 102079.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=5 |entrez_id=57864 |gc_percent=0.716418 |gene_alias=Ly110|TSCOT |gene_description=solute carrier family 46 member 2 |gene_name=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |TSCOT= | ||
| + | |all_trans=ENST00000374228.4:0 NM_033051:0 uc004bgk.3:0 AF242557:0 AK055571:18 AK314414:79 ENST00000491462.2:87 uc064vcx.1:87 BC048285:132 HQ448607:215 KJ899379:215 CU690566:215 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=0 | ||
|distance_to_tss=5 | |distance_to_tss=5 | ||
| + | |end=112890919 | ||
|entrez_id=57864 | |entrez_id=57864 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
|gene_alias=Ly110|TSCOT | |gene_alias=Ly110|TSCOT | ||
|gene_description=solute carrier family 46 member 2 | |gene_description=solute carrier family 46 member 2 | ||
| − | |gene_name=SLC46A2 | + | |gene_id=57864 |
| + | |gene_name=solute carrier family 46 member 2 | ||
| + | |gene_source=HGNC:16055 | ||
| + | |gene_symbol=SLC46A2 | ||
| + | |gene_synonyms=Ly110 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16055 | ||
|nearest_ensembl=ENSG00000119457 | |nearest_ensembl=ENSG00000119457 | ||
|nearest_promoter_id=NM_033051 | |nearest_promoter_id=NM_033051 | ||
|nearest_refseq=NM_033051 | |nearest_refseq=NM_033051 | ||
|nearest_unigene=Hs.512668 | |nearest_unigene=Hs.512668 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=112890896 | ||
| + | |strand=- | ||
|tata_box="-30(CCTTTTCTGGCC,+,0.00)" | |tata_box="-30(CCTTTTCTGGCC,+,0.00)" | ||
| + | |transcript_name=ENST00000374228.4 NM_033051 uc004bgk.3 AF242557 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102079.1 | |tss_id=hg_102079.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024QYV1 Q9BY10 | ||
}} | }} | ||
Revision as of 19:11, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000374228.4 NM_033051 uc004bgk.3 AF242557 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENST00000374228.4:0 NM_033051:0 uc004bgk.3:0 AF242557:0 AK055571:18 AK314414:79 ENST00000491462.2:87 uc064vcx.1:87 BC048285:132 HQ448607:215 KJ899379:215 CU690566:215 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_033051 |
| Entrez ID: | 57864 |
| Nearest Unigene: | Hs.512668 |
| Nearest Refseq: | NM_033051 |
| Nearest Ensembl: | ENSG00000119457 |
| Gene Name: | solute carrier family 46 member 2 |
| Gene Alias: | Ly110 |
| Gene Description: | solute carrier family 46 member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-30(CCTTTTCTGGCC,+,0.00)" |
