Difference between revisions of "TSS:Hg 102111.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=1 |entrez_id=54107 |gc_percent=0.671642 |gene_alias=CHARAC17|CHRAC17|YBL1|p17 |gene_description="DNA polymerase epsilon 3, acce...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CHRAC17= | ||
| + | |YBL1= | ||
| + | |all_trans=ENST00000374171.4:0 NR_027261:0 uc004bhn.4:0 AK074762:0 NM_017443:-67 NM_001278255:-67 ENST00000374169.7:285 uc011lxg.3:285 AK074629:285 AK096050:290 AK074782:293 BC003166:303 BC004170:303 ENST00000475080.1:317 uc064vei.1:317 ENST00000479871.1:324 uc064veh.1:324 AK092840:324 AF226077:374 AY720898:374 JF432738:374 KJ894010:374 AB527738:374 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=0 | ||
|distance_to_tss=1 | |distance_to_tss=1 | ||
| + | |end=113410682 | ||
|entrez_id=54107 | |entrez_id=54107 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
|gene_alias=CHARAC17|CHRAC17|YBL1|p17 | |gene_alias=CHARAC17|CHRAC17|YBL1|p17 | ||
|gene_description="DNA polymerase epsilon 3, accessory subunit" | |gene_description="DNA polymerase epsilon 3, accessory subunit" | ||
| − | |gene_name=POLE3 | + | |gene_id=54107 |
| + | |gene_name="polymerase (DNA) epsilon 3, accessory subunit" | ||
| + | |gene_source=HGNC:13546 | ||
| + | |gene_symbol=POLE3 | ||
| + | |gene_synonyms=CHARAC17 CHRAC17 Ybl1 p17 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:13546 | ||
|nearest_ensembl=ENSG00000148229 | |nearest_ensembl=ENSG00000148229 | ||
|nearest_promoter_id=NR_027261 | |nearest_promoter_id=NR_027261 | ||
|nearest_refseq=NM_017443 | |nearest_refseq=NM_017443 | ||
|nearest_unigene=Hs.108112 | |nearest_unigene=Hs.108112 | ||
| + | |num_trans=23 | ||
| + | |p17= | ||
| + | |species=human | ||
| + | |start=113410666 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000374171.4 NR_027261 uc004bhn.4 AK074762 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102111.1 | |tss_id=hg_102111.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024R829 Q9NRF9 | ||
}} | }} | ||
Revision as of 19:12, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000374171.4 NR_027261 uc004bhn.4 AK074762 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000374171.4:0 NR_027261:0 uc004bhn.4:0 AK074762:0 NM_017443:-67 NM_001278255:-67 ENST00000374169.7:285 uc011lxg.3:285 AK074629:285 AK096050:290 AK074782:293 BC003166:303 BC004170:303 ENST00000475080.1:317 uc064vei.1:317 ENST00000479871.1:324 uc064veh.1:324 AK092840:324 AF226077:374 AY720898:374 JF432738:374 KJ894010:374 AB527738:374 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NR_027261 |
| Entrez ID: | 54107 |
| Nearest Unigene: | Hs.108112 |
| Nearest Refseq: | NM_017443 |
| Nearest Ensembl: | ENSG00000148229 |
| Gene Name: | "polymerase (DNA) epsilon 3, accessory subunit" |
| Gene Alias: | CHARAC17 |
| Gene Description: | "DNA polymerase epsilon 3, accessory subunit" |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
