Difference between revisions of "TSS:Mm 109824.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000144896.1:62 NR_045884:62 uc029rqn.1:62 AK150533:62 |chr=chr12 |cpg_percent=0.005 |distance=62 |distance_to_tss=-67 |end=3862316 |entrez_id=1...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Gm10485= | ||
|all_trans=ENSMUST00000144896.1:62 NR_045884:62 uc029rqn.1:62 AK150533:62 | |all_trans=ENSMUST00000144896.1:62 NR_045884:62 uc029rqn.1:62 AK150533:62 | ||
|chr=chr12 | |chr=chr12 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=-67 | |distance_to_tss=-67 | ||
|end=3862316 | |end=3862316 | ||
| + | |end_of_center_position=3862311 | ||
|entrez_id=100038522 | |entrez_id=100038522 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias=ENSMUSG00000073242 | + | |gene_alias=ENSMUSG00000073242 |
|gene_description="DNA methyltransferase 3A, opposite strand" | |gene_description="DNA methyltransferase 3A, opposite strand" | ||
|gene_id=100038522 | |gene_id=100038522 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=3862305 | |start=3862305 | ||
| + | |start_of_center_position=3862310 | ||
|strand=- | |strand=- | ||
|transcript_name=ENSMUST00000144896.1 NR_045884 uc029rqn.1 AK150533 | |transcript_name=ENSMUST00000144896.1 NR_045884 uc029rqn.1 AK150533 | ||
Revision as of 13:46, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 3862310 |
|---|---|
| End of the center position in the TSS region: | 3862311 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000144896.1 NR_045884 uc029rqn.1 AK150533 |
|---|---|
| Distance: | 62 |
| Num_trans: | 4 |
| All_trans: | ENSMUST00000144896.1:62 NR_045884:62 uc029rqn.1:62 AK150533:62 |
TATA-Box annotation
| Distance to TSS: | -67 |
|---|---|
| Nearest PromoterID: | NR_045884 |
| Entrez ID: | 100038522 |
| Nearest Unigene: | Mm.417270 |
| Nearest Refseq: | NR_045884 |
| Nearest Ensembl: | ENSMUSG00000073242 |
| Gene Name: | "DNA methyltransferase 3A, opposite strand" |
| Gene Alias: | ENSMUSG00000073242 |
| Gene Description: | "DNA methyltransferase 3A, opposite strand" |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
