Difference between revisions of "TSS:Hg 10213.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=-40 |entrez_id=106614088 |gc_percent=0.741294 |gene_alias=- |gene_description=MIR34A host gene |gene_name=MIR34AHG |gene_type=n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000635687.1:0 EF592573:0 NR_132742:22 EF609116:22 EF570048:255 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=0 | ||
|distance_to_tss=-40 | |distance_to_tss=-40 | ||
| + | |end=9182397 | ||
|entrez_id=106614088 | |entrez_id=106614088 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=MIR34A host gene | |gene_description=MIR34A host gene | ||
| − | |gene_name=MIR34AHG | + | |gene_id=106614088 |
| + | |gene_name=MIR34A host gene | ||
| + | |gene_source=HGNC:51913 | ||
| + | |gene_symbol=MIR34AHG | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:51913 | ||
|nearest_ensembl=ENSG00000228526 | |nearest_ensembl=ENSG00000228526 | ||
|nearest_promoter_id=NR_132742 | |nearest_promoter_id=NR_132742 | ||
|nearest_refseq=NR_132742 | |nearest_refseq=NR_132742 | ||
|nearest_unigene=Hs.551837 | |nearest_unigene=Hs.551837 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=9182359 | ||
| + | |strand=- | ||
|tata_box="74(CCTTTTCAGGTG,+,0.00)" | |tata_box="74(CCTTTTCAGGTG,+,0.00)" | ||
| + | |transcript_name=ENST00000635687.1 EF592573 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10213.1 | |tss_id=hg_10213.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:13, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000635687.1 EF592573 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENST00000635687.1:0 EF592573:0 NR_132742:22 EF609116:22 EF570048:255 |
TATA-Box annotation
| Distance to TSS: | -40 |
|---|---|
| Nearest PromoterID: | NR_132742 |
| Entrez ID: | 106614088 |
| Nearest Unigene: | Hs.551837 |
| Nearest Refseq: | NR_132742 |
| Nearest Ensembl: | ENSG00000228526 |
| Gene Name: | MIR34A host gene |
| Gene Alias: | - |
| Gene Description: | MIR34A host gene |
| Gene Type: | ncRNA |
| CpG%: | 0.115 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "74(CCTTTTCAGGTG,+,0.00)" |
