Difference between revisions of "TSS:Hg 101925.1"
From referenceTSS
| Line 8: | Line 8: | ||
|distance_to_tss=79 | |distance_to_tss=79 | ||
|end=110256566 | |end=110256566 | ||
| + | |end_of_center_position=110256561 | ||
|entrez_id=7295 | |entrez_id=7295 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| − | |gene_alias=TRDX | + | |gene_alias=TRDX |
|gene_description=thioredoxin | |gene_description=thioredoxin | ||
|gene_id=7295 | |gene_id=7295 | ||
| Line 26: | Line 27: | ||
|species=human | |species=human | ||
|start=110256555 | |start=110256555 | ||
| + | |start_of_center_position=110256560 | ||
|strand=- | |strand=- | ||
|tata_box="19(CAGTTTATAAAG,-,0.00),21(GTTTATAAAGGG,+,0.00),21(GTTTATAAAGGG,-,0.00)" | |tata_box="19(CAGTTTATAAAG,-,0.00),21(GTTTATAAAGGG,+,0.00),21(GTTTATAAAGGG,-,0.00)" | ||
Revision as of 11:11, 11 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 110256560 |
|---|---|
| End of the center position in the TSS region: | 110256561 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK289508 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | AK289508:0 D28376:3 BX647247:15 X77584:41 BC054866:49 BC003377:64 J04026:64 ENST00000374517.5:-74 NM_003329:-74 NM_001244938:-74 uc004bep.3:-74 ENST00000374515.9:90 uc004beq.3:90 AF085844:109 AY004872:111 AF313911:111 AF276919:121 JQ313905:121 KJ897717:121 CR407665:121 AF065241:124 |
TATA-Box annotation
| Distance to TSS: | 79 |
|---|---|
| Nearest PromoterID: | NM_003329 |
| Entrez ID: | 7295 |
| Nearest Unigene: | Hs.435136 |
| Nearest Refseq: | NM_003329 |
| Nearest Ensembl: | ENSG00000136810 |
| Gene Name: | thioredoxin |
| Gene Alias: | TRDX |
| Gene Description: | thioredoxin |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "19(CAGTTTATAAAG,-,0.00),21(GTTTATAAAGGG,+,0.00),21(GTTTATAAAGGG,-,0.00)" |
