Difference between revisions of "TSS:Hg 102241.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=-491 |entrez_id=58483 |gc_percent=0.487562 |gene_alias=C9orf27|EST-YD1 |gene_description=long intergenic non-protein coding RNA...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |EST-YD1= | ||
| + | |all_trans=ENST00000374014.3:375 uc004bjm.4:375 AB021923:375 BC029369:453 NR_024032:484 BC104240:484 BC112996:484 BC112997:484 BC128039:484 BC104241:485 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=375 | ||
|distance_to_tss=-491 | |distance_to_tss=-491 | ||
| + | |end=115925596 | ||
|entrez_id=58483 | |entrez_id=58483 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
|gene_alias=C9orf27|EST-YD1 | |gene_alias=C9orf27|EST-YD1 | ||
|gene_description=long intergenic non-protein coding RNA 474 | |gene_description=long intergenic non-protein coding RNA 474 | ||
| − | |gene_name=LINC00474 | + | |gene_id=58483 |
| + | |gene_name=long intergenic non-protein coding RNA 474 | ||
| + | |gene_source=HGNC:23367 | ||
| + | |gene_symbol=LINC00474 | ||
| + | |gene_synonyms=EST-YD1 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:23367 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_024032 | |nearest_promoter_id=NR_024032 | ||
|nearest_refseq=NM_021208 | |nearest_refseq=NM_021208 | ||
|nearest_unigene=Hs.23367 | |nearest_unigene=Hs.23367 | ||
| + | |num_trans=10 | ||
| + | |species=human | ||
| + | |start=115925581 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000374014.3 uc004bjm.4 AB021923 | ||
| + | |tss_classification=no | ||
|tss_id=hg_102241.1 | |tss_id=hg_102241.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:18, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000374014.3 uc004bjm.4 AB021923 |
|---|---|
| Distance: | 375 |
| Num_trans: | 10 |
| All_trans: | ENST00000374014.3:375 uc004bjm.4:375 AB021923:375 BC029369:453 NR_024032:484 BC104240:484 BC112996:484 BC112997:484 BC128039:484 BC104241:485 |
TATA-Box annotation
| Distance to TSS: | -491 |
|---|---|
| Nearest PromoterID: | NR_024032 |
| Entrez ID: | 58483 |
| Nearest Unigene: | Hs.23367 |
| Nearest Refseq: | NM_021208 |
| Nearest Ensembl: | |
| Gene Name: | long intergenic non-protein coding RNA 474 |
| Gene Alias: | C9orf27 |
| Gene Description: | long intergenic non-protein coding RNA 474 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
