Difference between revisions of "TSS:Hg 102997.1"
From referenceTSS
| Line 6: | Line 6: | ||
|distance_to_tss=106 | |distance_to_tss=106 | ||
|end=133376082 | |end=133376082 | ||
| + | |end_of_center_position=133376061 | ||
|entrez_id=6836 | |entrez_id=6836 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
| Line 24: | Line 25: | ||
|species=human | |species=human | ||
|start=133376038 | |start=133376038 | ||
| + | |start_of_center_position=133376060 | ||
|strand=- | |strand=- | ||
|tata_box="-73(GCCCCTTTAAGG,-,0.00),-72(CCCCTTTAAGGC,-,0.00),-71(CCCTTTAAGGCT,+,0.00)" | |tata_box="-73(GCCCCTTTAAGG,-,0.00),-72(CCCCTTTAAGGC,-,0.00),-71(CCCTTTAAGGCT,+,0.00)" | ||
Revision as of 14:59, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 133376060 |
|---|---|
| End of the center position in the TSS region: | 133376061 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000371991.3 uc064wvc.1 AK299656 AF078866 AF078867 AK303309 AK295435 AK300004 AK316480 |
|---|---|
| Distance: | 0 |
| Num_trans: | 43 |
| All_trans: | ENST00000371991.3:0 uc064wvc.1:0 AK299656:0 AF078866:0 AF078867:0 AK303309:0 AK295435:0 AK300004:0 AK316480:0 BC111023:8 ENST00000371989.7:-17 ENST00000485435.6:-17 uc004cdj.5:-17 uc064wuz.1:-17 BX647961:20 ENST00000371982.3:29 uc064wvd.1:29 AK315488:-36 AK293434:39 ENST00000467910.5:48 uc064wvb.1:48 BC018741:50 AB528538:65 DQ892024:68 DQ895216:68 AM392907:68 KJ892231:69 CU676306:69 ENST00000545297.5:-84 ENST00000613129.4:-84 ENST00000618229.4:-84 NM_033161:-84 NM_001280792:-84 NM_001280791:-84 NM_001280790:-84 NM_001280789:-84 NM_001280793:-84 uc011mdd.4:-84 uc011mdb.4:-84 uc011mdc.4:-84 Y14820:91 AK301737:474 AK310333:477 |
TATA-Box annotation
| Distance to TSS: | 106 |
|---|---|
| Nearest PromoterID: | NM_001280793 |
| Entrez ID: | 6836 |
| Nearest Unigene: | Hs.512465 |
| Nearest Refseq: | NM_033161 |
| Nearest Ensembl: | ENSG00000148248 |
| Gene Name: | surfeit 4 |
| Gene Alias: | ERV29 |
| Gene Description: | surfeit 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-73(GCCCCTTTAAGG,-,0.00),-72(CCCCTTTAAGGC,-,0.00),-71(CCCTTTAAGGCT,+,0.00)" |
