Difference between revisions of "TSS:Hg 102310.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=167 |entrez_id=26147 |gc_percent=0.80597 |gene_alias=MTF2L1|PCL3|TDRD19B |gene_description=PHD finger protein 19 |gene_name=PHF...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PCL3= | ||
| + | |TDRD19B= | ||
| + | |all_trans=ENST00000312189.10:-22 uc004bkt.5:-22 AK122744:-22 BC022374:-22 AK303433:-52 BC108663:-123 ENST00000436309.5:130 uc064vkd.1:130 ENST00000373896.7:-162 NM_015651:-162 NM_001286843:-162 NM_001009936:-162 uc004bks.3:-162 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| + | |distance=-22 | ||
|distance_to_tss=167 | |distance_to_tss=167 | ||
| + | |end=120877166 | ||
|entrez_id=26147 | |entrez_id=26147 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
|gene_alias=MTF2L1|PCL3|TDRD19B | |gene_alias=MTF2L1|PCL3|TDRD19B | ||
|gene_description=PHD finger protein 19 | |gene_description=PHD finger protein 19 | ||
| − | |gene_name=PHF19 | + | |gene_id=26147 |
| + | |gene_name=PHD finger protein 19 | ||
| + | |gene_source=HGNC:24566 | ||
| + | |gene_symbol=PHF19 | ||
| + | |gene_synonyms=DKFZP727G051 MTF2L1 PCL3 TDRD19B | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:24566 | ||
|nearest_ensembl=ENSG00000119403 | |nearest_ensembl=ENSG00000119403 | ||
|nearest_promoter_id=NM_001009936 | |nearest_promoter_id=NM_001009936 | ||
|nearest_refseq=NM_015651 | |nearest_refseq=NM_015651 | ||
|nearest_unigene=Hs.460124 | |nearest_unigene=Hs.460124 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=120877155 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000312189.10 uc004bkt.5 AK122744 BC022374 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102310.1 | |tss_id=hg_102310.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B3KV88 Q5T6S3 | ||
}} | }} | ||
Revision as of 19:21, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000312189.10 uc004bkt.5 AK122744 BC022374 |
|---|---|
| Distance: | -22 |
| Num_trans: | 13 |
| All_trans: | ENST00000312189.10:-22 uc004bkt.5:-22 AK122744:-22 BC022374:-22 AK303433:-52 BC108663:-123 ENST00000436309.5:130 uc064vkd.1:130 ENST00000373896.7:-162 NM_015651:-162 NM_001286843:-162 NM_001009936:-162 uc004bks.3:-162 |
TATA-Box annotation
| Distance to TSS: | 167 |
|---|---|
| Nearest PromoterID: | NM_001009936 |
| Entrez ID: | 26147 |
| Nearest Unigene: | Hs.460124 |
| Nearest Refseq: | NM_015651 |
| Nearest Ensembl: | ENSG00000119403 |
| Gene Name: | PHD finger protein 19 |
| Gene Alias: | MTF2L1 |
| Gene Description: | PHD finger protein 19 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
