Difference between revisions of "TSS:Hg 10238.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.065 |distance_to_tss=-63986 |entrez_id=101929074 |gc_percent=0.532338 |gene_alias=- |gene_description=PIK3CD antisense RNA 2 |gene_name=PIK3CD-AS2 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000435891.5:-4 uc057cbf.1:-4 AK000605:-4 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| + | |distance=-4 | ||
|distance_to_tss=-63986 | |distance_to_tss=-63986 | ||
| + | |end=9751577 | ||
|entrez_id=101929074 | |entrez_id=101929074 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=PIK3CD antisense RNA 2 | |gene_description=PIK3CD antisense RNA 2 | ||
| − | |gene_name= | + | |gene_id=22883 |
| + | |gene_name=calsyntenin 1 | ||
| + | |gene_source=HGNC:17447 | ||
| + | |gene_symbol=CLSTN1 | ||
| + | |gene_synonyms=CDHR12 CSTN1 KIAA0911 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:17447 | ||
|nearest_ensembl=ENSG00000231789 | |nearest_ensembl=ENSG00000231789 | ||
|nearest_promoter_id=NR_126368 | |nearest_promoter_id=NR_126368 | ||
|nearest_refseq=NR_126366 | |nearest_refseq=NR_126366 | ||
|nearest_unigene=Hs.661762 | |nearest_unigene=Hs.661762 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=9751542 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000435891.5 uc057cbf.1 AK000605 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10238.1 | |tss_id=hg_10238.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5SR54 | ||
}} | }} | ||
Revision as of 19:23, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000435891.5 uc057cbf.1 AK000605 |
|---|---|
| Distance: | -4 |
| Num_trans: | 3 |
| All_trans: | ENST00000435891.5:-4 uc057cbf.1:-4 AK000605:-4 |
TATA-Box annotation
| Distance to TSS: | -63986 |
|---|---|
| Nearest PromoterID: | NR_126368 |
| Entrez ID: | 101929074 |
| Nearest Unigene: | Hs.661762 |
| Nearest Refseq: | NR_126366 |
| Nearest Ensembl: | ENSG00000231789 |
| Gene Name: | calsyntenin 1 |
| Gene Alias: | - |
| Gene Description: | PIK3CD antisense RNA 2 |
| Gene Type: | ncRNA |
| CpG%: | 0.065 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
