Difference between revisions of "TSS:Hg 102388.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.07 |distance_to_tss=51 |entrez_id=26468 |gc_percent=0.641791 |gene_alias=LHX6.1 |gene_description=LIM homeobox 6 |gene_name=LHX6 |gene_type=protein-...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=AK313808:0 ENST00000373755.6:-41 ENST00000373754.6:-41 NM_001242334:-41 uc010mvw.3:-41 uc064vmd.1:-41 AK289827:-41 AB031041:43 AB031042:43 EU446700:49 AM392697:49 AM393362:49 KJ902431:50 ENST00000560152.1:403 uc064vmh.1:403 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| + | |distance=0 | ||
|distance_to_tss=51 | |distance_to_tss=51 | ||
| + | |end=122227545 | ||
|entrez_id=26468 | |entrez_id=26468 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
|gene_alias=LHX6.1 | |gene_alias=LHX6.1 | ||
|gene_description=LIM homeobox 6 | |gene_description=LIM homeobox 6 | ||
| − | |gene_name=LHX6 | + | |gene_id=26468 |
| + | |gene_name=LIM homeobox 6 | ||
| + | |gene_source=HGNC:21735 | ||
| + | |gene_symbol=LHX6 | ||
| + | |gene_synonyms=LHX6.1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:21735 | ||
|nearest_ensembl=ENSG00000106852 | |nearest_ensembl=ENSG00000106852 | ||
|nearest_promoter_id=NM_001242334 | |nearest_promoter_id=NM_001242334 | ||
|nearest_refseq=NM_014368 | |nearest_refseq=NM_014368 | ||
|nearest_unigene=Hs.103137 | |nearest_unigene=Hs.103137 | ||
| + | |num_trans=15 | ||
| + | |species=human | ||
| + | |start=122227525 | ||
| + | |strand=- | ||
|tata_box="-86(GGCTTTAAATGC,-,0.00),-84(CTTTAAATGCCC,+,0.00)" | |tata_box="-86(GGCTTTAAATGC,-,0.00),-84(CTTTAAATGCCC,+,0.00)" | ||
| + | |transcript_name=AK313808 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102388.1 | |tss_id=hg_102388.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:24, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK313808 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | AK313808:0 ENST00000373755.6:-41 ENST00000373754.6:-41 NM_001242334:-41 uc010mvw.3:-41 uc064vmd.1:-41 AK289827:-41 AB031041:43 AB031042:43 EU446700:49 AM392697:49 AM393362:49 KJ902431:50 ENST00000560152.1:403 uc064vmh.1:403 |
TATA-Box annotation
| Distance to TSS: | 51 |
|---|---|
| Nearest PromoterID: | NM_001242334 |
| Entrez ID: | 26468 |
| Nearest Unigene: | Hs.103137 |
| Nearest Refseq: | NM_014368 |
| Nearest Ensembl: | ENSG00000106852 |
| Gene Name: | LIM homeobox 6 |
| Gene Alias: | LHX6.1 |
| Gene Description: | LIM homeobox 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-86(GGCTTTAAATGC,-,0.00),-84(CTTTAAATGCCC,+,0.00)" |
