Difference between revisions of "TSS:Hg 102398.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=77 |entrez_id=5082 |gc_percent=0.631841 |gene_alias=PhLP |gene_description=phosducin like |gene_name=PDCL |gene_type=protein-co...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=AL117602:0 BC017227:9 ENST00000259467.8:-12 uc004bmz.3:-12 AF031463:-12 NM_005388:-37 AK313429:-37 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=0 | ||
|distance_to_tss=77 | |distance_to_tss=77 | ||
| + | |end=122828619 | ||
|entrez_id=5082 | |entrez_id=5082 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
|gene_alias=PhLP | |gene_alias=PhLP | ||
|gene_description=phosducin like | |gene_description=phosducin like | ||
| − | |gene_name=PDCL | + | |gene_id=5082 |
| + | |gene_name=phosducin like | ||
| + | |gene_source=HGNC:8770 | ||
| + | |gene_symbol=PDCL | ||
| + | |gene_synonyms=DKFZp564M1863 PhLP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8770 | ||
|nearest_ensembl=ENSG00000136940 | |nearest_ensembl=ENSG00000136940 | ||
|nearest_promoter_id=NM_005388 | |nearest_promoter_id=NM_005388 | ||
|nearest_refseq=NM_005388 | |nearest_refseq=NM_005388 | ||
|nearest_unigene=Hs.271749 | |nearest_unigene=Hs.271749 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=122828539 | ||
| + | |strand=- | ||
| + | |transcript_name=AL117602 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102398.1 | |tss_id=hg_102398.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:24, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AL117602 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | AL117602:0 BC017227:9 ENST00000259467.8:-12 uc004bmz.3:-12 AF031463:-12 NM_005388:-37 AK313429:-37 |
TATA-Box annotation
| Distance to TSS: | 77 |
|---|---|
| Nearest PromoterID: | NM_005388 |
| Entrez ID: | 5082 |
| Nearest Unigene: | Hs.271749 |
| Nearest Refseq: | NM_005388 |
| Nearest Ensembl: | ENSG00000136940 |
| Gene Name: | phosducin like |
| Gene Alias: | PhLP |
| Gene Description: | phosducin like |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
