Difference between revisions of "TSS:Hg 102407.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=-68765 |entrez_id=81571 |gc_percent=0.402985 |gene_alias=C9orf45|GL012|NCRNA00287 |gene_description=MIR600 host gene |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GL012= | ||
| + | |NCRNA00287= | ||
| + | |all_trans=ENST00000447404.6:-60 uc064vol.1:-60 AF333337:76 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=-60 | ||
|distance_to_tss=-68765 | |distance_to_tss=-68765 | ||
| + | |end=123184250 | ||
|entrez_id=81571 | |entrez_id=81571 | ||
|gc_percent=0.402985 | |gc_percent=0.402985 | ||
|gene_alias=C9orf45|GL012|NCRNA00287 | |gene_alias=C9orf45|GL012|NCRNA00287 | ||
|gene_description=MIR600 host gene | |gene_description=MIR600 host gene | ||
| − | |gene_name= | + | |gene_id=55342 |
| + | |gene_name=spermatid perinuclear RNA binding protein | ||
| + | |gene_source=HGNC:16462 | ||
| + | |gene_symbol=STRBP | ||
| + | |gene_synonyms=FLJ11307 SPNR | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:16462 | ||
|nearest_ensembl=ENSG00000236901 | |nearest_ensembl=ENSG00000236901 | ||
|nearest_promoter_id=NR_026677 | |nearest_promoter_id=NR_026677 | ||
|nearest_refseq=NM_030814 | |nearest_refseq=NM_030814 | ||
|nearest_unigene=Hs.708072 | |nearest_unigene=Hs.708072 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=123184233 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000447404.6 uc064vol.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_102407.1 | |tss_id=hg_102407.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=V9HWK4 | ||
}} | }} | ||
Revision as of 19:25, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000447404.6 uc064vol.1 |
|---|---|
| Distance: | -60 |
| Num_trans: | 3 |
| All_trans: | ENST00000447404.6:-60 uc064vol.1:-60 AF333337:76 |
TATA-Box annotation
| Distance to TSS: | -68765 |
|---|---|
| Nearest PromoterID: | NR_026677 |
| Entrez ID: | 81571 |
| Nearest Unigene: | Hs.708072 |
| Nearest Refseq: | NM_030814 |
| Nearest Ensembl: | ENSG00000236901 |
| Gene Name: | spermatid perinuclear RNA binding protein |
| Gene Alias: | C9orf45 |
| Gene Description: | MIR600 host gene |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.402985 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
