Difference between revisions of "TSS:Hg 102410.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.19 |distance_to_tss=43 |entrez_id=55342 |gc_percent=0.820896 |gene_alias=HEL162|ILF3L|SPNR|p74 |gene_description=spermatid perinuclear RNA binding p...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ILF3L= | ||
| + | |SPNR= | ||
| + | |all_trans=ENST00000348403.9:-37 ENST00000407982.6:-37 NR_033234:-37 NM_018387:-37 uc004bns.4:-37 uc064vom.1:-37 BC017732:-37 EU794683:-37 AL833947:-37 AL834150:-37 ENST00000360998.3:-49 NM_001171137:-49 uc004bnu.4:-49 AL136866:-49 BC108731:-66 AK027890:-91 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.19 | |cpg_percent=0.19 | ||
| + | |distance=-37 | ||
|distance_to_tss=43 | |distance_to_tss=43 | ||
| + | |end=123268527 | ||
|entrez_id=55342 | |entrez_id=55342 | ||
|gc_percent=0.820896 | |gc_percent=0.820896 | ||
|gene_alias=HEL162|ILF3L|SPNR|p74 | |gene_alias=HEL162|ILF3L|SPNR|p74 | ||
|gene_description=spermatid perinuclear RNA binding protein | |gene_description=spermatid perinuclear RNA binding protein | ||
| − | |gene_name=STRBP | + | |gene_id=55342 |
| + | |gene_name=spermatid perinuclear RNA binding protein | ||
| + | |gene_source=HGNC:16462 | ||
| + | |gene_symbol=STRBP | ||
| + | |gene_synonyms=FLJ11307 SPNR | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16462 | ||
|nearest_ensembl=ENSG00000165209 | |nearest_ensembl=ENSG00000165209 | ||
|nearest_promoter_id=NM_018387 | |nearest_promoter_id=NM_018387 | ||
|nearest_refseq=NM_018387 | |nearest_refseq=NM_018387 | ||
|nearest_unigene=Hs.287659 | |nearest_unigene=Hs.287659 | ||
| + | |num_trans=16 | ||
| + | |p74= | ||
| + | |species=human | ||
| + | |start=123268514 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000348403.9 ENST00000407982.6 NR_033234 NM_018387 uc004bns.4 uc064vom.1 BC017732 EU794683 AL833947 AL834150 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102410.1 | |tss_id=hg_102410.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5JPA5 V9HWK4 | ||
}} | }} | ||
Revision as of 19:25, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000348403.9 ENST00000407982.6 NR_033234 NM_018387 uc004bns.4 uc064vom.1 BC017732 EU794683 AL833947 AL834150 |
|---|---|
| Distance: | -37 |
| Num_trans: | 16 |
| All_trans: | ENST00000348403.9:-37 ENST00000407982.6:-37 NR_033234:-37 NM_018387:-37 uc004bns.4:-37 uc064vom.1:-37 BC017732:-37 EU794683:-37 AL833947:-37 AL834150:-37 ENST00000360998.3:-49 NM_001171137:-49 uc004bnu.4:-49 AL136866:-49 BC108731:-66 AK027890:-91 |
TATA-Box annotation
| Distance to TSS: | 43 |
|---|---|
| Nearest PromoterID: | NM_018387 |
| Entrez ID: | 55342 |
| Nearest Unigene: | Hs.287659 |
| Nearest Refseq: | NM_018387 |
| Nearest Ensembl: | ENSG00000165209 |
| Gene Name: | spermatid perinuclear RNA binding protein |
| Gene Alias: | HEL162 |
| Gene Description: | spermatid perinuclear RNA binding protein |
| Gene Type: | protein-coding |
| CpG%: | 0.19 |
| GC%: | 0.820896 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
