Difference between revisions of "TSS:Hg 105812.1"
From referenceTSS
| Line 15: | Line 15: | ||
|distance_to_tss=-50 | |distance_to_tss=-50 | ||
|end=79610895 | |end=79610895 | ||
| + | |end_of_center_position=79610889 | ||
|entrez_id=653509 | |entrez_id=653509 | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
| − | |gene_alias=COLEC4 | + | |gene_alias=COLEC4 |
|gene_description=surfactant protein A1 | |gene_description=surfactant protein A1 | ||
|gene_id=653509 | |gene_id=653509 | ||
| Line 33: | Line 34: | ||
|species=human | |species=human | ||
|start=79610882 | |start=79610882 | ||
| + | |start_of_center_position=79610888 | ||
|strand=+ | |strand=+ | ||
|tata_box="19(ATCTATAAATGC,-,0.00)" | |tata_box="19(ATCTATAAATGC,-,0.00)" | ||
Revision as of 05:50, 12 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 79610888 |
|---|---|
| End of the center position in the TSS region: | 79610889 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000398636.7 ENST00000428376.6 NM_005411 NM_001164646 NM_001093770 NM_001164645 NM_001164644 NM_001164647 uc001kap.4 uc001kar.4 AK290703 AK298002 AK298034 AK298029 |
|---|---|
| Distance: | 44 |
| Num_trans: | 44 |
| All_trans: | ENST00000398636.7:44 ENST00000428376.6:44 NM_005411:44 NM_001164646:44 NM_001093770:44 NM_001164645:44 NM_001164644:44 NM_001164647:44 uc001kap.4:44 uc001kar.4:44 AK290703:44 AK298002:44 AK298034:44 AK298029:44 AK316196:45 HQ021433:45 HQ021434:45 HQ021435:45 HQ021436:45 HQ021437:45 HQ021438:45 HQ021439:45 HQ021440:45 HQ021441:45 HQ021442:45 JX502764:45 JX502765:45 AK298092:47 S69687:49 S69688:49 S69690:49 AK309518:49 ENST00000419470.6:50 uc009xry.4:50 BC026229:50 M13686:56 ENST00000429958.5:58 uc057ulj.1:58 ENST00000439264.1:60 uc057ulk.1:60 BC111570:65 ENST00000486922.1:66 uc057ull.1:66 BC029913:424 |
TATA-Box annotation
| Distance to TSS: | -50 |
|---|---|
| Nearest PromoterID: | NM_001164647 |
| Entrez ID: | 653509 |
| Nearest Unigene: | Hs.535295 |
| Nearest Refseq: | NM_005411 |
| Nearest Ensembl: | ENSG00000122852 |
| Gene Name: | surfactant protein A1 |
| Gene Alias: | COLEC4 |
| Gene Description: | surfactant protein A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "19(ATCTATAAATGC,-,0.00)" |
