Difference between revisions of "TSS:Hg 106128.1"
From referenceTSS
| Line 14: | Line 14: | ||
|distance_to_tss=172 | |distance_to_tss=172 | ||
|end=89328005 | |end=89328005 | ||
| + | |end_of_center_position=89327991 | ||
|entrez_id=3437 | |entrez_id=3437 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| − | |gene_alias=CIG-49 | + | |gene_alias=CIG-49 |
|gene_description=interferon induced protein with tetratricopeptide repeats 3 | |gene_description=interferon induced protein with tetratricopeptide repeats 3 | ||
|gene_id=3437 | |gene_id=3437 | ||
| Line 32: | Line 33: | ||
|species=human | |species=human | ||
|start=89327976 | |start=89327976 | ||
| + | |start_of_center_position=89327990 | ||
|strand=+ | |strand=+ | ||
|tata_box="-91(TCCCCTAAAAGC,-,0.00),-27(CCCTTTATATAG,+,0.00),-27(CCCTTTATATAG,-,0.00),-25(CTTTATATAGTT,+,0.00)" | |tata_box="-91(TCCCCTAAAAGC,-,0.00),-27(CCCTTTATATAG,+,0.00),-27(CCCTTTATATAG,-,0.00),-25(CTTTATATAGTT,+,0.00)" | ||
Revision as of 06:38, 12 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89327990 |
|---|---|
| End of the center position in the TSS region: | 89327991 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AF083470 AK312675 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | AF083470:0 AK312675:0 U52513:8 AK290427:-68 ENST00000371818.8:-83 uc001kgf.5:-83 NM_001289758:-158 NM_001549:-158 |
TATA-Box annotation
| Distance to TSS: | 172 |
|---|---|
| Nearest PromoterID: | NM_001549 |
| Entrez ID: | 3437 |
| Nearest Unigene: | Hs.47338 |
| Nearest Refseq: | NM_001549 |
| Nearest Ensembl: | ENSG00000119917 |
| Gene Name: | interferon induced protein with tetratricopeptide repeats 3 |
| Gene Alias: | CIG-49 |
| Gene Description: | interferon induced protein with tetratricopeptide repeats 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-91(TCCCCTAAAAGC,-,0.00),-27(CCCTTTATATAG,+,0.00),-27(CCCTTTATATAG,-,0.00),-25(CTTTATATAGTT,+,0.00)" |
