Difference between revisions of "TSS:Mm 162397.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000113457.8:-225 AF169387:-225 ENSMUST00000141994.1:-280 NM_007734:-280 uc007bru.1:-280 uc007brv.1:-280 AK086939:-280 |chr=chr1 |cpg_percent=0....") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENSMUST00000113457.8:-225 AF169387:-225 ENSMUST00000141994.1:-280 NM_007734:-280 uc007bru.1:-280 uc007brv.1:-280 AK086939:-280 | |all_trans=ENSMUST00000113457.8:-225 AF169387:-225 ENSMUST00000141994.1:-280 NM_007734:-280 uc007bru.1:-280 uc007brv.1:-280 AK086939:-280 | ||
+ | |alpha3(IV)= | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
Line 6: | Line 7: | ||
|distance_to_tss=282 | |distance_to_tss=282 | ||
|end=82587205 | |end=82587205 | ||
+ | |end_of_center_position=82587203 | ||
|entrez_id=12828 | |entrez_id=12828 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
− | |gene_alias=[a]3 | + | |gene_alias=[a]3(IV) |
|gene_description="collagen, type IV, alpha 3" | |gene_description="collagen, type IV, alpha 3" | ||
|gene_id=12828 | |gene_id=12828 | ||
Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=82587200 | |start=82587200 | ||
+ | |start_of_center_position=82587202 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000113457.8 AF169387 | |transcript_name=ENSMUST00000113457.8 AF169387 |
Revision as of 20:56, 10 May 2019
Basic information about the TSS
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Start of the center position in the TSS region: | 82587202 |
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End of the center position in the TSS region: | 82587203 |
Gene and protein annotation
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Transcript annotation
Transcript_name: | ENSMUST00000113457.8 AF169387 |
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Distance: | -225 |
Num_trans: | 7 |
All_trans: | ENSMUST00000113457.8:-225 AF169387:-225 ENSMUST00000141994.1:-280 NM_007734:-280 uc007bru.1:-280 uc007brv.1:-280 AK086939:-280 |
TATA-Box annotation
Distance to TSS: | 282 |
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Nearest PromoterID: | NM_007734 |
Entrez ID: | 12828 |
Nearest Unigene: | Mm.389135 |
Nearest Refseq: | NM_007734 |
Nearest Ensembl: | ENSMUSG00000079465 |
Gene Name: | "collagen, type IV, alpha 3" |
Gene Alias: | [a]3(IV) |
Gene Description: | "collagen, type IV, alpha 3" |
Gene Type: | protein-coding |
CpG%: | 0.06 |
GC%: | 0.626866 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |