Difference between revisions of "TSS:Mm 162989.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000109532.8:34 ENSMUST00000180260.7:42 ENSMUST00000141353.7:42 ENSMUST00000131612.1:42 NM_027860:42 uc007iff.1:42 uc007ifh.1:42 uc007ifi.1:42 u...") |
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| Line 6: | Line 6: | ||
|distance_to_tss=-43 | |distance_to_tss=-43 | ||
|end=23633675 | |end=23633675 | ||
| + | |end_of_center_position=23633674 | ||
|entrez_id=71675 | |entrez_id=71675 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=Kiaa1841 | + | |gene_alias=Kiaa1841 |
|gene_description=RIKEN cDNA 0610010F05 gene | |gene_description=RIKEN cDNA 0610010F05 gene | ||
|gene_id=71675 | |gene_id=71675 | ||
| Line 17: | Line 18: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1918925 | |hgnc_mgi_id=MGI:1918925 | ||
| + | |mKIAA1841= | ||
|nearest_ensembl=ENSMUSG00000042208 | |nearest_ensembl=ENSMUSG00000042208 | ||
|nearest_promoter_id=NM_027860 | |nearest_promoter_id=NM_027860 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=23633672 | |start=23633672 | ||
| + | |start_of_center_position=23633673 | ||
|strand=- | |strand=- | ||
|transcript_name=ENSMUST00000109532.8 | |transcript_name=ENSMUST00000109532.8 | ||
Revision as of 22:20, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 23633673 |
|---|---|
| End of the center position in the TSS region: | 23633674 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000109532.8 |
|---|---|
| Distance: | 34 |
| Num_trans: | 16 |
| All_trans: | ENSMUST00000109532.8:34 ENSMUST00000180260.7:42 ENSMUST00000141353.7:42 ENSMUST00000131612.1:42 NM_027860:42 uc007iff.1:42 uc007ifh.1:42 uc007ifi.1:42 uc011xsf.1:42 AK053838:42 BC072622:52 BC079876:56 AK129454:75 BC055049:75 ENSMUST00000155903.7:124 AK029538:124 |
TATA-Box annotation
| Distance to TSS: | -43 |
|---|---|
| Nearest PromoterID: | NM_027860 |
| Entrez ID: | 71675 |
| Nearest Unigene: | Mm.48031 |
| Nearest Refseq: | NM_027860 |
| Nearest Ensembl: | ENSMUSG00000042208 |
| Gene Name: | RIKEN cDNA 0610010F05 gene |
| Gene Alias: | Kiaa1841 |
| Gene Description: | RIKEN cDNA 0610010F05 gene |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
