Difference between revisions of "TSS:Mm 163001.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK184012:351 |chr=chr11 |cpg_percent=0.02 |distance=351 |distance_to_tss=10734 |end=32237239 |entrez_id=268395 |gc_percent=0.522388 |gene_alias=9830006D...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |AI326268= | ||
| + | |APNG= | ||
| + | |Aag= | ||
| + | |Mid1= | ||
|all_trans=AK184012:351 | |all_trans=AK184012:351 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 10: | ||
|distance_to_tss=10734 | |distance_to_tss=10734 | ||
|end=32237239 | |end=32237239 | ||
| + | |end_of_center_position=32237239 | ||
|entrez_id=268395 | |entrez_id=268395 | ||
|gc_percent=0.522388 | |gc_percent=0.522388 | ||
| − | |gene_alias=9830006D05 | + | |gene_alias=9830006D05 |
|gene_description=N-methylpurine-DNA glycosylase | |gene_description=N-methylpurine-DNA glycosylase | ||
|gene_id=17168 | |gene_id=17168 | ||
| Line 24: | Line 29: | ||
|species=mouse | |species=mouse | ||
|start=32237238 | |start=32237238 | ||
| + | |start_of_center_position=32237238 | ||
|strand=- | |strand=- | ||
|tata_box="-24(AGCTAGAAAAGC,-,0.00),-4(ACCTTTTAATGG,-,0.00),-2(CTTTTAATGGCG,+,0.00)" | |tata_box="-24(AGCTAGAAAAGC,-,0.00),-4(ACCTTTTAATGG,-,0.00),-2(CTTTTAATGGCG,+,0.00)" | ||
Revision as of 22:53, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 32237238 |
|---|---|
| End of the center position in the TSS region: | 32237239 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK184012 |
|---|---|
| Distance: | 351 |
| Num_trans: | 1 |
| All_trans: | AK184012:351 |
TATA-Box annotation
| Distance to TSS: | 10734 |
|---|---|
| Nearest PromoterID: | NM_010822 |
| Entrez ID: | 268395 |
| Nearest Unigene: | Mm.263161 |
| Nearest Refseq: | NM_010822 |
| Nearest Ensembl: | ENSMUSG00000020287 |
| Gene Name: | nitrogen permease regulator-like 3 |
| Gene Alias: | 9830006D05 |
| Gene Description: | N-methylpurine-DNA glycosylase |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-24(AGCTAGAAAAGC,-,0.00),-4(ACCTTTTAATGG,-,0.00),-2(CTTTTAATGGCG,+,0.00)" |
