Difference between revisions of "TSS:Hg 102710.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=21 |entrez_id=51490 |gc_percent=0.696517 |gene_alias=C9orf114|CENP-32|HSPC109 |gene_description=SPOUT domain containing methyltr...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CENP-32= | ||
| + | |HSPC109= | ||
| + | |all_trans=ENST00000361256.9:0 ENST00000622809.1:0 NM_016390:0 uc004bwd.3:0 uc064wgx.1:0 AL110193:0 AK303563:0 BC010579:0 BC046133:0 BC063644:0 BC021273:0 BC056890:0 BC033677:0 BC039590:0 AF161459:0 HQ448052:0 CU687792:0 ENST00000466556.5:1 uc064wha.1:1 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=0 | ||
|distance_to_tss=21 | |distance_to_tss=21 | ||
| + | |end=128829821 | ||
|entrez_id=51490 | |entrez_id=51490 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
|gene_alias=C9orf114|CENP-32|HSPC109 | |gene_alias=C9orf114|CENP-32|HSPC109 | ||
|gene_description=SPOUT domain containing methyltransferase 1 | |gene_description=SPOUT domain containing methyltransferase 1 | ||
| − | |gene_name= | + | |gene_id=51490 |
| + | |gene_name=chromosome 9 open reading frame 114 | ||
| + | |gene_source=HGNC:26933 | ||
| + | |gene_symbol=C9orf114 | ||
| + | |gene_synonyms=CENP-32 HSPC109 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26933 | ||
|nearest_ensembl=ENSG00000198917 | |nearest_ensembl=ENSG00000198917 | ||
|nearest_promoter_id=NM_016390 | |nearest_promoter_id=NM_016390 | ||
|nearest_refseq=NM_016390 | |nearest_refseq=NM_016390 | ||
|nearest_unigene=Hs.224137 | |nearest_unigene=Hs.224137 | ||
| + | |num_trans=19 | ||
| + | |species=human | ||
| + | |start=128829779 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000361256.9 ENST00000622809.1 NM_016390 uc004bwd.3 uc064wgx.1 AL110193 AK303563 BC010579 BC046133 BC063644 BC021273 BC056890 BC033677 BC039590 AF161459 HQ448052 CU687792 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102710.1 | |tss_id=hg_102710.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087WYA7 B4E0X4 Q5T280 Q9P041 | ||
}} | }} | ||
Revision as of 19:38, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000361256.9 ENST00000622809.1 NM_016390 uc004bwd.3 uc064wgx.1 AL110193 AK303563 BC010579 BC046133 BC063644 BC021273 BC056890 BC033677 BC039590 AF161459 HQ448052 CU687792 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | ENST00000361256.9:0 ENST00000622809.1:0 NM_016390:0 uc004bwd.3:0 uc064wgx.1:0 AL110193:0 AK303563:0 BC010579:0 BC046133:0 BC063644:0 BC021273:0 BC056890:0 BC033677:0 BC039590:0 AF161459:0 HQ448052:0 CU687792:0 ENST00000466556.5:1 uc064wha.1:1 |
TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_016390 |
| Entrez ID: | 51490 |
| Nearest Unigene: | Hs.224137 |
| Nearest Refseq: | NM_016390 |
| Nearest Ensembl: | ENSG00000198917 |
| Gene Name: | chromosome 9 open reading frame 114 |
| Gene Alias: | C9orf114 |
| Gene Description: | SPOUT domain containing methyltransferase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
