Difference between revisions of "TSS:Mm 1823.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000113457.8:-168 AF169387:-168 ENSMUST00000141994.1:-223 NM_007734:-223 uc007bru.1:-223 uc007brv.1:-223 AK086939:-223 |chr=chr1 |cpg_percent=0....") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=ENSMUST00000113457.8:-168 AF169387:-168 ENSMUST00000141994.1:-223 NM_007734:-223 uc007bru.1:-223 uc007brv.1:-223 AK086939:-223 | |all_trans=ENSMUST00000113457.8:-168 AF169387:-168 ENSMUST00000141994.1:-223 NM_007734:-223 uc007bru.1:-223 uc007brv.1:-223 AK086939:-223 | ||
| + | |alpha3(IV)= | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=229 | |distance_to_tss=229 | ||
|end=82587156 | |end=82587156 | ||
| + | |end_of_center_position=82587150 | ||
|entrez_id=12828 | |entrez_id=12828 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=[a]3 | + | |gene_alias=[a]3(IV) |
|gene_description="collagen, type IV, alpha 3" | |gene_description="collagen, type IV, alpha 3" | ||
|gene_id=12828 | |gene_id=12828 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=82587143 | |start=82587143 | ||
| + | |start_of_center_position=82587149 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000113457.8 AF169387 | |transcript_name=ENSMUST00000113457.8 AF169387 | ||
Revision as of 20:56, 10 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 82587149 |
|---|---|
| End of the center position in the TSS region: | 82587150 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000113457.8 AF169387 |
|---|---|
| Distance: | -168 |
| Num_trans: | 7 |
| All_trans: | ENSMUST00000113457.8:-168 AF169387:-168 ENSMUST00000141994.1:-223 NM_007734:-223 uc007bru.1:-223 uc007brv.1:-223 AK086939:-223 |
TATA-Box annotation
| Distance to TSS: | 229 |
|---|---|
| Nearest PromoterID: | NM_007734 |
| Entrez ID: | 12828 |
| Nearest Unigene: | Mm.389135 |
| Nearest Refseq: | NM_007734 |
| Nearest Ensembl: | ENSMUSG00000079465 |
| Gene Name: | "collagen, type IV, alpha 3" |
| Gene Alias: | [a]3(IV) |
| Gene Description: | "collagen, type IV, alpha 3" |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
