Difference between revisions of "TSS:Hg 102882.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=20 |entrez_id=9442 |gc_percent=0.59204 |gene_alias=CRAP34|CRSP34|CRSP8|MED3|TRAP37 |gene_description=mediator complex subunit 27...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CRSP34= | ||
| + | |CRSP8= | ||
| + | |MED3= | ||
| + | |TRAP37= | ||
| + | |all_trans=ENST00000357028.6:0 ENST00000474263.1:0 uc004cbf.3:0 uc022box.2:0 BC002878:0 AK316345:0 AK298436:0 BC119722:0 BC119723:0 HG518166:0 BC070331:4 BC064608:5 NM_004269:-13 NM_001253881:-13 NM_001253882:-13 EU446747:15 AB527898:15 ENST00000292035.9:-34 uc004cbe.3:-34 AF104252:130 AF230382:130 DQ099387:130 Z36848:190 ENST00000444872.3:215 uc064wru.1:215 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=0 | ||
|distance_to_tss=20 | |distance_to_tss=20 | ||
| + | |end=132079874 | ||
|entrez_id=9442 | |entrez_id=9442 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
|gene_alias=CRAP34|CRSP34|CRSP8|MED3|TRAP37 | |gene_alias=CRAP34|CRSP34|CRSP8|MED3|TRAP37 | ||
|gene_description=mediator complex subunit 27 | |gene_description=mediator complex subunit 27 | ||
| − | |gene_name=MED27 | + | |gene_id=9442 |
| + | |gene_name=mediator complex subunit 27 | ||
| + | |gene_source=HGNC:2377 | ||
| + | |gene_symbol=MED27 | ||
| + | |gene_synonyms=CRSP34 MED3 TRAP37 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2377 | ||
|nearest_ensembl=ENSG00000160563 | |nearest_ensembl=ENSG00000160563 | ||
|nearest_promoter_id=NM_001253882 | |nearest_promoter_id=NM_001253882 | ||
|nearest_refseq=NM_004269 | |nearest_refseq=NM_004269 | ||
|nearest_unigene=Hs.374262 | |nearest_unigene=Hs.374262 | ||
| + | |num_trans=25 | ||
| + | |species=human | ||
| + | |start=132079859 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000357028.6 ENST00000474263.1 uc004cbf.3 uc022box.2 BC002878 AK316345 AK298436 BC119722 BC119723 HG518166 | ||
| + | |tss_classification=no | ||
|tss_id=hg_102882.1 | |tss_id=hg_102882.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q6P2C8 U4Q365 | ||
}} | }} | ||
Revision as of 19:45, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000357028.6 ENST00000474263.1 uc004cbf.3 uc022box.2 BC002878 AK316345 AK298436 BC119722 BC119723 HG518166 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENST00000357028.6:0 ENST00000474263.1:0 uc004cbf.3:0 uc022box.2:0 BC002878:0 AK316345:0 AK298436:0 BC119722:0 BC119723:0 HG518166:0 BC070331:4 BC064608:5 NM_004269:-13 NM_001253881:-13 NM_001253882:-13 EU446747:15 AB527898:15 ENST00000292035.9:-34 uc004cbe.3:-34 AF104252:130 AF230382:130 DQ099387:130 Z36848:190 ENST00000444872.3:215 uc064wru.1:215 |
TATA-Box annotation
| Distance to TSS: | 20 |
|---|---|
| Nearest PromoterID: | NM_001253882 |
| Entrez ID: | 9442 |
| Nearest Unigene: | Hs.374262 |
| Nearest Refseq: | NM_004269 |
| Nearest Ensembl: | ENSG00000160563 |
| Gene Name: | mediator complex subunit 27 |
| Gene Alias: | CRAP34 |
| Gene Description: | mediator complex subunit 27 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
