Difference between revisions of "TSS:Hg 102977.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.15 |distance_to_tss=2 |entrez_id=28 |gc_percent=0.800995 |gene_alias=A3GALNT|A3GALT1|GTB|NAGAT |gene_description="ABO, alpha 1-3-N-acetylgalactosami...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |A3GALT1= | ||
| + | |GTB= | ||
| + | |NAGAT= | ||
| + | |all_trans=ENST00000453660.3:0 ENST00000611156.4:0 ENST00000538324.2:0 NM_020469:0 uc064wtz.1:0 uc033djz.1:0 uc064wua.1:0 AK302203:0 KJ896361:2 CU686922:2 JX519569:3 JX519570:3 JX398332:3 JX398333:3 AF134412:3 AF134413:3 AF134414:3 AF134415:3 AF134416:3 BC069595:3 BC069605:3 BC111575:3 DQ139865:3 FR691751:3 FR691752:3 J05175:3 JN791441:3 JX398330:3 JX398331:3 KT282967:3 BC069814:3 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.15 | |cpg_percent=0.15 | ||
| + | |distance=0 | ||
|distance_to_tss=2 | |distance_to_tss=2 | ||
| + | |end=133275232 | ||
|entrez_id=28 | |entrez_id=28 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
|gene_alias=A3GALNT|A3GALT1|GTB|NAGAT | |gene_alias=A3GALNT|A3GALT1|GTB|NAGAT | ||
|gene_description="ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase" | |gene_description="ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase" | ||
| − | |gene_name=ABO | + | |gene_id=28 |
| + | |gene_name="ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)" | ||
| + | |gene_source=HGNC:79 | ||
| + | |gene_symbol=ABO | ||
| + | |gene_synonyms=A3GALNT A3GALT1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:79 | ||
|nearest_ensembl=ENSG00000175164 | |nearest_ensembl=ENSG00000175164 | ||
|nearest_promoter_id=NM_020469 | |nearest_promoter_id=NM_020469 | ||
|nearest_refseq=NM_020469 | |nearest_refseq=NM_020469 | ||
|nearest_unigene=Hs.654423 | |nearest_unigene=Hs.654423 | ||
| + | |num_trans=31 | ||
| + | |species=human | ||
| + | |start=133275191 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000453660.3 ENST00000611156.4 ENST00000538324.2 NM_020469 uc064wtz.1 uc033djz.1 uc064wua.1 AK302203 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102977.1 | |tss_id=hg_102977.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087X009 A0A087X0C2 B4DY01 P16442 | ||
}} | }} | ||
Revision as of 19:49, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000453660.3 ENST00000611156.4 ENST00000538324.2 NM_020469 uc064wtz.1 uc033djz.1 uc064wua.1 AK302203 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | ENST00000453660.3:0 ENST00000611156.4:0 ENST00000538324.2:0 NM_020469:0 uc064wtz.1:0 uc033djz.1:0 uc064wua.1:0 AK302203:0 KJ896361:2 CU686922:2 JX519569:3 JX519570:3 JX398332:3 JX398333:3 AF134412:3 AF134413:3 AF134414:3 AF134415:3 AF134416:3 BC069595:3 BC069605:3 BC111575:3 DQ139865:3 FR691751:3 FR691752:3 J05175:3 JN791441:3 JX398330:3 JX398331:3 KT282967:3 BC069814:3 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_020469 |
| Entrez ID: | 28 |
| Nearest Unigene: | Hs.654423 |
| Nearest Refseq: | NM_020469 |
| Nearest Ensembl: | ENSG00000175164 |
| Gene Name: | "ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)" |
| Gene Alias: | A3GALNT |
| Gene Description: | "ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase" |
| Gene Type: | protein-coding |
| CpG%: | 0.15 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
