Difference between revisions of "TSS:Hg 102987.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.14 |distance_to_tss=13 |entrez_id=6834 |gc_percent=0.791045 |gene_alias=CMT4K |gene_description="SURF1, cytochrome c oxidase assembly factor" |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000371974.7:0 ENST00000615505.4:0 NM_003172:0 NM_001280787:0 uc004cdh.3:0 uc033dkg.1:0 BC028314:0 BC071658:0 Z35093:0 AK291122:0 KJ897625:0 KJ897626:0 KR710709:0 KR710710:0 KR710711:0 DQ890823:0 DQ893977:0 KU178341:0 KU178342:0 KU178343:0 CU687126:0 ENST00000437995.1:129 uc064wuu.1:129 ENST00000463965.1:-181 uc064wuw.1:-181 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| + | |distance=0 | ||
|distance_to_tss=13 | |distance_to_tss=13 | ||
| + | |end=133356495 | ||
|entrez_id=6834 | |entrez_id=6834 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
|gene_alias=CMT4K | |gene_alias=CMT4K | ||
|gene_description="SURF1, cytochrome c oxidase assembly factor" | |gene_description="SURF1, cytochrome c oxidase assembly factor" | ||
| − | |gene_name=SURF1 | + | |gene_id=6834 |
| + | |gene_name=surfeit 1 | ||
| + | |gene_source=HGNC:11474 | ||
| + | |gene_symbol=SURF1 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11474 | ||
|nearest_ensembl=ENSG00000148290 | |nearest_ensembl=ENSG00000148290 | ||
|nearest_promoter_id=NM_001280787 | |nearest_promoter_id=NM_001280787 | ||
|nearest_refseq=NM_003172 | |nearest_refseq=NM_003172 | ||
|nearest_unigene=Hs.512464 | |nearest_unigene=Hs.512464 | ||
| + | |num_trans=25 | ||
| + | |species=human | ||
| + | |start=133356448 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000371974.7 ENST00000615505.4 NM_003172 NM_001280787 uc004cdh.3 uc033dkg.1 BC028314 BC071658 Z35093 AK291122 KJ897625 KJ897626 KR710709 KR710710 KR710711 DQ890823 DQ893977 KU178341 KU178342 KU178343 CU687126 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102987.1 | |tss_id=hg_102987.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087WYS9 A0A0S2Z4J4 A0A0S2Z523 E5KRX5 Q15526 | ||
}} | }} | ||
Revision as of 19:49, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000371974.7 ENST00000615505.4 NM_003172 NM_001280787 uc004cdh.3 uc033dkg.1 BC028314 BC071658 Z35093 AK291122 KJ897625 KJ897626 KR710709 KR710710 KR710711 DQ890823 DQ893977 KU178341 KU178342 KU178343 CU687126 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENST00000371974.7:0 ENST00000615505.4:0 NM_003172:0 NM_001280787:0 uc004cdh.3:0 uc033dkg.1:0 BC028314:0 BC071658:0 Z35093:0 AK291122:0 KJ897625:0 KJ897626:0 KR710709:0 KR710710:0 KR710711:0 DQ890823:0 DQ893977:0 KU178341:0 KU178342:0 KU178343:0 CU687126:0 ENST00000437995.1:129 uc064wuu.1:129 ENST00000463965.1:-181 uc064wuw.1:-181 |
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NM_001280787 |
| Entrez ID: | 6834 |
| Nearest Unigene: | Hs.512464 |
| Nearest Refseq: | NM_003172 |
| Nearest Ensembl: | ENSG00000148290 |
| Gene Name: | surfeit 1 |
| Gene Alias: | CMT4K |
| Gene Description: | "SURF1, cytochrome c oxidase assembly factor" |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
