Difference between revisions of "TSS:Hg 10299.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.17 |distance_to_tss=35 |entrez_id=93611 |gc_percent=0.78607 |gene_alias=FBG3|FBX30|FBX6A|Fbx44|Fbxo6a |gene_description=F-box protein 44 |gene_name=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |FBX30= | ||
| + | |FBX6A= | ||
| + | |Fbx44= | ||
| + | |Fbxo6a= | ||
| + | |all_trans=BC025233:-1 BC096747:-17 AK313019:-17 BC014957:-35 AK308531:62 DQ892848:64 DQ892849:64 DQ896095:64 CR542110:66 KJ898609:66 CU692940:66 AB463629:66 ENST00000466919.1:209 uc057cgi.1:209 ENST00000354287.4:-268 uc001asj.4:-268 AF187318:-268 NM_012168:-417 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
| + | |distance=-1 | ||
|distance_to_tss=35 | |distance_to_tss=35 | ||
| + | |end=11654414 | ||
|entrez_id=93611 | |entrez_id=93611 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
|gene_alias=FBG3|FBX30|FBX6A|Fbx44|Fbxo6a | |gene_alias=FBG3|FBX30|FBX6A|Fbx44|Fbxo6a | ||
|gene_description=F-box protein 44 | |gene_description=F-box protein 44 | ||
| − | |gene_name= | + | |gene_id=26232 |
| + | |gene_name=F-box protein 2 | ||
| + | |gene_source=HGNC:13581 | ||
| + | |gene_symbol=FBXO2 | ||
| + | |gene_synonyms=FBX2 Fbg1 Fbs1 Nfb42 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:13581 | ||
|nearest_ensembl=ENSG00000132879 | |nearest_ensembl=ENSG00000132879 | ||
|nearest_promoter_id=NM_001304791 | |nearest_promoter_id=NM_001304791 | ||
|nearest_refseq=NM_033182 | |nearest_refseq=NM_033182 | ||
|nearest_unigene=Hs.556006 | |nearest_unigene=Hs.556006 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=11654405 | ||
| + | |strand=- | ||
|tata_box="-53(GGCCTTTAAGAG,-,0.00),-52(GCCTTTAAGAGG,-,0.00),-51(CCTTTAAGAGGC,+,0.00)" | |tata_box="-53(GGCCTTTAAGAG,-,0.00),-52(GCCTTTAAGAGG,-,0.00),-51(CCTTTAAGAGGC,+,0.00)" | ||
| + | |transcript_name=BC025233 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10299.1 | |tss_id=hg_10299.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 19:50, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC025233 |
|---|---|
| Distance: | -1 |
| Num_trans: | 18 |
| All_trans: | BC025233:-1 BC096747:-17 AK313019:-17 BC014957:-35 AK308531:62 DQ892848:64 DQ892849:64 DQ896095:64 CR542110:66 KJ898609:66 CU692940:66 AB463629:66 ENST00000466919.1:209 uc057cgi.1:209 ENST00000354287.4:-268 uc001asj.4:-268 AF187318:-268 NM_012168:-417 |
TATA-Box annotation
| Distance to TSS: | 35 |
|---|---|
| Nearest PromoterID: | NM_001304791 |
| Entrez ID: | 93611 |
| Nearest Unigene: | Hs.556006 |
| Nearest Refseq: | NM_033182 |
| Nearest Ensembl: | ENSG00000132879 |
| Gene Name: | F-box protein 2 |
| Gene Alias: | FBG3 |
| Gene Description: | F-box protein 44 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-53(GGCCTTTAAGAG,-,0.00),-52(GCCTTTAAGAGG,-,0.00),-51(CCTTTAAGAGGC,+,0.00)" |
