Difference between revisions of "TSS:Hg 102997.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.165 |distance_to_tss=106 |entrez_id=6836 |gc_percent=0.791045 |gene_alias=ERV29 |gene_description=surfeit 4 |gene_name=SURF4 |gene_type=protein-codi...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000371991.3:0 uc064wvc.1:0 AK299656:0 AF078866:0 AF078867:0 AK303309:0 AK295435:0 AK300004:0 AK316480:0 BC111023:8 ENST00000371989.7:-17 ENST00000485435.6:-17 uc004cdj.5:-17 uc064wuz.1:-17 BX647961:20 ENST00000371982.3:29 uc064wvd.1:29 AK315488:-36 AK293434:39 ENST00000467910.5:48 uc064wvb.1:48 BC018741:50 AB528538:65 DQ892024:68 DQ895216:68 AM392907:68 KJ892231:69 CU676306:69 ENST00000545297.5:-84 ENST00000613129.4:-84 ENST00000618229.4:-84 NM_033161:-84 NM_001280792:-84 NM_001280791:-84 NM_001280790:-84 NM_001280789:-84 NM_001280793:-84 uc011mdd.4:-84 uc011mdb.4:-84 uc011mdc.4:-84 Y14820:91 AK301737:474 AK310333:477 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
| + | |distance=0 | ||
|distance_to_tss=106 | |distance_to_tss=106 | ||
| + | |end=133376082 | ||
|entrez_id=6836 | |entrez_id=6836 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
|gene_alias=ERV29 | |gene_alias=ERV29 | ||
|gene_description=surfeit 4 | |gene_description=surfeit 4 | ||
| − | |gene_name=SURF4 | + | |gene_id=6836 |
| + | |gene_name=surfeit 4 | ||
| + | |gene_source=HGNC:11476 | ||
| + | |gene_symbol=SURF4 | ||
| + | |gene_synonyms=ERV29 FLJ22993 MGC102753 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11476 | ||
|nearest_ensembl=ENSG00000148248 | |nearest_ensembl=ENSG00000148248 | ||
|nearest_promoter_id=NM_001280793 | |nearest_promoter_id=NM_001280793 | ||
|nearest_refseq=NM_033161 | |nearest_refseq=NM_033161 | ||
|nearest_unigene=Hs.512465 | |nearest_unigene=Hs.512465 | ||
| + | |num_trans=43 | ||
| + | |species=human | ||
| + | |start=133376038 | ||
| + | |strand=- | ||
|tata_box="-73(GCCCCTTTAAGG,-,0.00),-72(CCCCTTTAAGGC,-,0.00),-71(CCCTTTAAGGCT,+,0.00)" | |tata_box="-73(GCCCCTTTAAGG,-,0.00),-72(CCCCTTTAAGGC,-,0.00),-71(CCCTTTAAGGCT,+,0.00)" | ||
| + | |transcript_name=ENST00000371991.3 uc064wvc.1 AK299656 AF078866 AF078867 AK303309 AK295435 AK300004 AK316480 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_102997.1 | |tss_id=hg_102997.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B7Z605 B7Z8F3 Q5T8U5 | ||
}} | }} | ||
Revision as of 19:50, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000371991.3 uc064wvc.1 AK299656 AF078866 AF078867 AK303309 AK295435 AK300004 AK316480 |
|---|---|
| Distance: | 0 |
| Num_trans: | 43 |
| All_trans: | ENST00000371991.3:0 uc064wvc.1:0 AK299656:0 AF078866:0 AF078867:0 AK303309:0 AK295435:0 AK300004:0 AK316480:0 BC111023:8 ENST00000371989.7:-17 ENST00000485435.6:-17 uc004cdj.5:-17 uc064wuz.1:-17 BX647961:20 ENST00000371982.3:29 uc064wvd.1:29 AK315488:-36 AK293434:39 ENST00000467910.5:48 uc064wvb.1:48 BC018741:50 AB528538:65 DQ892024:68 DQ895216:68 AM392907:68 KJ892231:69 CU676306:69 ENST00000545297.5:-84 ENST00000613129.4:-84 ENST00000618229.4:-84 NM_033161:-84 NM_001280792:-84 NM_001280791:-84 NM_001280790:-84 NM_001280789:-84 NM_001280793:-84 uc011mdd.4:-84 uc011mdb.4:-84 uc011mdc.4:-84 Y14820:91 AK301737:474 AK310333:477 |
TATA-Box annotation
| Distance to TSS: | 106 |
|---|---|
| Nearest PromoterID: | NM_001280793 |
| Entrez ID: | 6836 |
| Nearest Unigene: | Hs.512465 |
| Nearest Refseq: | NM_033161 |
| Nearest Ensembl: | ENSG00000148248 |
| Gene Name: | surfeit 4 |
| Gene Alias: | ERV29 |
| Gene Description: | surfeit 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-73(GCCCCTTTAAGG,-,0.00),-72(CCCCTTTAAGGC,-,0.00),-71(CCCTTTAAGGCT,+,0.00)" |
