Difference between revisions of "TSS:Hg 103044.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.14 |distance_to_tss=-42 |entrez_id=7410 |gc_percent=0.791045 |gene_alias=VAV-2 |gene_description=vav guanine nucleotide exchange factor 2 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_001134398:26 NM_003371:26 BC132965:26 BC132967:26 ENST00000371850.7:40 uc004ces.4:40 S76992:67 AB587478:68 ENST00000406606.7:69 uc004cer.4:69 ENST00000486113.1:91 uc064wwi.1:91 BX640754:186 ENST00000371851.1:-222 uc064wwh.1:-222 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.14 | |cpg_percent=0.14 | ||
| + | |distance=26 | ||
|distance_to_tss=-42 | |distance_to_tss=-42 | ||
| + | |end=133992382 | ||
|entrez_id=7410 | |entrez_id=7410 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
|gene_alias=VAV-2 | |gene_alias=VAV-2 | ||
|gene_description=vav guanine nucleotide exchange factor 2 | |gene_description=vav guanine nucleotide exchange factor 2 | ||
| − | |gene_name=VAV2 | + | |gene_id=7410 |
| + | |gene_name=vav guanine nucleotide exchange factor 2 | ||
| + | |gene_source=HGNC:12658 | ||
| + | |gene_symbol=VAV2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12658 | ||
|nearest_ensembl=ENSG00000160293 | |nearest_ensembl=ENSG00000160293 | ||
|nearest_promoter_id=NM_001134398 | |nearest_promoter_id=NM_001134398 | ||
|nearest_refseq=NM_003371 | |nearest_refseq=NM_003371 | ||
|nearest_unigene=Hs.369921 | |nearest_unigene=Hs.369921 | ||
| + | |num_trans=15 | ||
| + | |species=human | ||
| + | |start=133992349 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_001134398 NM_003371 BC132965 BC132967 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103044.1 | |tss_id=hg_103044.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P52735 | ||
}} | }} | ||
Revision as of 19:52, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001134398 NM_003371 BC132965 BC132967 |
|---|---|
| Distance: | 26 |
| Num_trans: | 15 |
| All_trans: | NM_001134398:26 NM_003371:26 BC132965:26 BC132967:26 ENST00000371850.7:40 uc004ces.4:40 S76992:67 AB587478:68 ENST00000406606.7:69 uc004cer.4:69 ENST00000486113.1:91 uc064wwi.1:91 BX640754:186 ENST00000371851.1:-222 uc064wwh.1:-222 |
TATA-Box annotation
| Distance to TSS: | -42 |
|---|---|
| Nearest PromoterID: | NM_001134398 |
| Entrez ID: | 7410 |
| Nearest Unigene: | Hs.369921 |
| Nearest Refseq: | NM_003371 |
| Nearest Ensembl: | ENSG00000160293 |
| Gene Name: | vav guanine nucleotide exchange factor 2 |
| Gene Alias: | VAV-2 |
| Gene Description: | vav guanine nucleotide exchange factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
