Difference between revisions of "TSS:Hg 103045.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.175 |distance_to_tss=-473 |entrez_id=7410 |gc_percent=0.830846 |gene_alias=VAV-2 |gene_description=vav guanine nucleotide exchange factor 2 |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000371851.1:165 uc064wwh.1:165 NM_001134398:445 NM_003371:445 BC132965:445 BC132967:445 ENST00000371850.7:459 uc004ces.4:459 S76992:486 AB587478:487 ENST00000406606.7:488 uc004cer.4:488 | ||
| + | |chr=chr9 | ||
|cpg_percent=0.175 | |cpg_percent=0.175 | ||
| + | |distance=165 | ||
|distance_to_tss=-473 | |distance_to_tss=-473 | ||
| + | |end=133992825 | ||
|entrez_id=7410 | |entrez_id=7410 | ||
|gc_percent=0.830846 | |gc_percent=0.830846 | ||
|gene_alias=VAV-2 | |gene_alias=VAV-2 | ||
|gene_description=vav guanine nucleotide exchange factor 2 | |gene_description=vav guanine nucleotide exchange factor 2 | ||
| − | |gene_name=VAV2 | + | |gene_id=7410 |
| + | |gene_name=vav guanine nucleotide exchange factor 2 | ||
| + | |gene_source=HGNC:12658 | ||
| + | |gene_symbol=VAV2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12658 | ||
|nearest_ensembl=ENSG00000160293 | |nearest_ensembl=ENSG00000160293 | ||
|nearest_promoter_id=NM_001134398 | |nearest_promoter_id=NM_001134398 | ||
|nearest_refseq=NM_003371 | |nearest_refseq=NM_003371 | ||
|nearest_unigene=Hs.369921 | |nearest_unigene=Hs.369921 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=133992768 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000371851.1 uc064wwh.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103045.1 | |tss_id=hg_103045.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P52735 | ||
}} | }} | ||
Revision as of 19:52, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000371851.1 uc064wwh.1 |
|---|---|
| Distance: | 165 |
| Num_trans: | 12 |
| All_trans: | ENST00000371851.1:165 uc064wwh.1:165 NM_001134398:445 NM_003371:445 BC132965:445 BC132967:445 ENST00000371850.7:459 uc004ces.4:459 S76992:486 AB587478:487 ENST00000406606.7:488 uc004cer.4:488 |
TATA-Box annotation
| Distance to TSS: | -473 |
|---|---|
| Nearest PromoterID: | NM_001134398 |
| Entrez ID: | 7410 |
| Nearest Unigene: | Hs.369921 |
| Nearest Refseq: | NM_003371 |
| Nearest Ensembl: | ENSG00000160293 |
| Gene Name: | vav guanine nucleotide exchange factor 2 |
| Gene Alias: | VAV-2 |
| Gene Description: | vav guanine nucleotide exchange factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.175 |
| GC%: | 0.830846 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
